Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KWG56_RS09210 Genome accession   NZ_CP080034
Coordinates   1893553..1894053 (-) Length   166 a.a.
NCBI ID   WP_087119497.1    Uniprot ID   A0A1V1UWW1
Organism   Brevundimonas nasdae strain Au29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1888553..1899053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWG56_RS09180 (KWG56_09180) - 1889092..1889625 (-) 534 WP_219354524.1 DUF1003 domain-containing protein -
  KWG56_RS09185 (KWG56_09185) - 1889655..1890581 (-) 927 WP_201099507.1 DMT family transporter -
  KWG56_RS09190 (KWG56_09190) - 1890711..1891310 (+) 600 WP_219354525.1 nucleoside 2-deoxyribosyltransferase domain-containing protein -
  KWG56_RS09195 (KWG56_09195) - 1891307..1891777 (-) 471 WP_219354526.1 DUF2269 domain-containing protein -
  KWG56_RS09200 (KWG56_09200) - 1891774..1893075 (-) 1302 WP_219354527.1 SDR family oxidoreductase -
  KWG56_RS09205 (KWG56_09205) - 1893072..1893467 (-) 396 WP_244999447.1 thiol-disulfide oxidoreductase DCC family protein -
  KWG56_RS09210 (KWG56_09210) ssb 1893553..1894053 (-) 501 WP_087119497.1 single-stranded DNA-binding protein Machinery gene
  KWG56_RS09215 (KWG56_09215) - 1894232..1894654 (-) 423 WP_219354529.1 hypothetical protein -
  KWG56_RS09220 (KWG56_09220) - 1894654..1895334 (-) 681 WP_219354530.1 hypothetical protein -
  KWG56_RS09225 (KWG56_09225) - 1895416..1898094 (-) 2679 WP_219354531.1 transcriptional regulator -
  KWG56_RS09230 (KWG56_09230) - 1898156..1898989 (-) 834 WP_219354532.1 flagellin -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17872.72 Da        Isoelectric Point: 5.9696

>NTDB_id=590842 KWG56_RS09210 WP_087119497.1 1893553..1894053(-) (ssb) [Brevundimonas nasdae strain Au29]
MAGSVNKVILVGNLGRDPEIRSMPNGDRIANLSIATSETWRDKSSGERKEKTEWHRVVIFNDNIVKVVENYVKKGSTVYI
EGALQTRKWTDQQGVEKYSTEIVVSRFKGELTMLGGRSEGGSSGGGYGGGGGGRGDDDYSSGFSTGGANKPSGPKESYDL
NDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=590842 KWG56_RS09210 WP_087119497.1 1893553..1894053(-) (ssb) [Brevundimonas nasdae strain Au29]
ATGGCTGGATCAGTCAACAAGGTCATTCTGGTCGGTAATCTGGGCCGCGACCCGGAAATCCGCTCCATGCCGAACGGCGA
CCGCATCGCCAACCTGTCGATTGCGACCTCGGAAACCTGGCGCGACAAGTCCTCGGGCGAGCGCAAGGAAAAAACCGAAT
GGCACCGCGTCGTCATCTTCAACGACAACATCGTCAAGGTCGTTGAGAACTATGTGAAGAAGGGCTCGACCGTCTATATC
GAGGGCGCGCTTCAGACCCGCAAATGGACCGACCAGCAGGGCGTCGAGAAATACTCGACCGAGATCGTGGTCAGCCGCTT
CAAGGGTGAACTGACCATGCTGGGCGGCCGTTCGGAAGGCGGTTCGTCGGGCGGCGGTTACGGCGGCGGCGGCGGTGGTC
GCGGCGACGACGACTATTCGTCGGGCTTCTCGACCGGCGGCGCCAACAAGCCCAGCGGTCCCAAGGAAAGCTACGACCTG
AACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V1UWW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.09

100

0.536
  ssb Vibrio cholerae strain A1552

48.555

100

0.506
  ssb Neisseria meningitidis MC58

39.779

100

0.434
  ssb Neisseria gonorrhoeae MS11

39.779

100

0.434