Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FGCSD_RS11505 Genome accession   NZ_AP018726
Coordinates   1731841..1732506 (-) Length   221 a.a.
NCBI ID   WP_129556117.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1726841..1737506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS08605 (FGCSD_1672) - 1730094..1731116 (+) 1023 WP_129555386.1 IS30 family transposase -
  FGCSD_RS08610 (FGCSD_1673) raiA 1731213..1731761 (-) 549 WP_003061817.1 ribosome-associated translation inhibitor RaiA -
  FGCSD_RS11505 (FGCSD_1674) comFC/cflB 1731841..1732506 (-) 666 WP_129556117.1 ComF family protein Machinery gene
  FGCSD_RS08620 (FGCSD_1676) - 1732478..1733802 (-) 1325 Protein_1635 DEAD/DEAH box helicase -
  FGCSD_RS08625 (FGCSD_1677) - 1733858..1734499 (+) 642 WP_129556118.1 YigZ family protein -
  FGCSD_RS08630 (FGCSD_1678) cysK 1734600..1735535 (+) 936 WP_129556119.1 cysteine synthase A -
  FGCSD_RS08635 (FGCSD_1679) - 1735688..1736047 (-) 360 WP_129556120.1 S1 RNA-binding domain-containing protein -
  FGCSD_RS08640 (FGCSD_1680) - 1736047..1737447 (-) 1401 WP_129556121.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25411.45 Da        Isoelectric Point: 8.8600

>NTDB_id=59073 FGCSD_RS11505 WP_129556117.1 1731841..1732506(-) (comFC/cflB) [Streptococcus dysgalactiae strain Kdys0611]
MICLLCQRFSPLPLRITDILFLKPQTATLCQECQQGFQKISFTSCQTCNAPSQSSPCSDCLEWKVKGYEVNHRSLYQYNA
AMKAYFSQYKFQGDYLLRHIFAQELAQVIKKDYPDFTPVPVPISKERYEERHFNQVTAILEAGSINYCMLFKRMDTSRQS
SKTKNERLLSKDAYRLSTFSELPAKILIIDDIYTTGSTIIALKKLLMHVGNSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=59073 FGCSD_RS11505 WP_129556117.1 1731841..1732506(-) (comFC/cflB) [Streptococcus dysgalactiae strain Kdys0611]
ATGATATGCCTCCTATGTCAACGATTTAGTCCATTACCCTTGCGAATAACAGATATTCTCTTTTTGAAACCTCAAACAGC
AACTCTCTGTCAGGAGTGTCAACAAGGGTTTCAAAAGATAAGCTTCACGAGTTGCCAAACCTGTAACGCTCCTTCCCAAA
GCTCTCCATGTTCTGATTGTTTAGAATGGAAAGTCAAAGGATACGAGGTTAATCACAGAAGTTTATATCAGTATAACGCT
GCTATGAAAGCTTATTTTAGCCAATATAAGTTTCAAGGAGACTACTTGCTAAGACATATCTTTGCTCAAGAATTAGCCCA
AGTTATTAAAAAAGACTATCCAGATTTTACTCCTGTTCCAGTTCCTATCAGTAAGGAGCGTTATGAAGAACGTCATTTCA
ATCAAGTGACTGCTATACTTGAAGCAGGGAGTATTAACTATTGCATGCTTTTTAAAAGAATGGATACTAGCCGTCAGTCT
TCTAAAACTAAAAATGAAAGATTATTATCCAAAGATGCCTACCGTCTCTCCACCTTCTCTGAATTACCAGCAAAAATCCT
CATTATTGATGATATTTACACTACCGGTAGCACCATTATCGCTTTGAAAAAACTATTAATGCATGTTGGAAATAGTGACA
TCAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412
  comFC/cflB Streptococcus mitis SK321

40.724

100

0.407
  comFC/cflB Streptococcus pneumoniae TIGR4

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae Rx1

39.819

100

0.398
  comFC/cflB Streptococcus pneumoniae D39

39.819

100

0.398
  comFC/cflB Streptococcus pneumoniae R6

39.819

100

0.398

Multiple sequence alignment