Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KYI09_RS10980 Genome accession   NZ_CP079965
Coordinates   2078964..2079482 (-) Length   172 a.a.
NCBI ID   WP_041636241.1    Uniprot ID   -
Organism   Macrococcoides caseolyticum strain 19Msa0687     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2073964..2084482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYI09_RS10955 (KYI09_10960) - 2074379..2075647 (-) 1269 WP_219521579.1 nucleobase:cation symporter-2 family protein -
  KYI09_RS10960 (KYI09_10965) xpt 2075647..2076231 (-) 585 WP_015912443.1 xanthine phosphoribosyltransferase -
  KYI09_RS10965 (KYI09_10970) - 2076735..2077754 (+) 1020 WP_101035663.1 DUF2382 domain-containing protein -
  KYI09_RS10970 (KYI09_10975) - 2077855..2078469 (+) 615 WP_219521582.1 GNAT family N-acetyltransferase -
  KYI09_RS10975 (KYI09_10980) rpsR 2078689..2078931 (-) 243 WP_041636240.1 30S ribosomal protein S18 -
  KYI09_RS10980 (KYI09_10985) ssbA 2078964..2079482 (-) 519 WP_041636241.1 single-stranded DNA-binding protein Machinery gene
  KYI09_RS10985 (KYI09_10990) rpsF 2079507..2079797 (-) 291 WP_099482228.1 30S ribosomal protein S6 -
  KYI09_RS10990 (KYI09_10995) - 2079934..2080251 (-) 318 WP_041636242.1 hypothetical protein -
  KYI09_RS10995 (KYI09_11000) ychF 2080275..2081375 (-) 1101 WP_015912447.1 redox-regulated ATPase YchF -
  KYI09_RS11000 (KYI09_11005) - 2081408..2081590 (-) 183 WP_041636244.1 DUF951 domain-containing protein -
  KYI09_RS11005 (KYI09_11010) - 2081592..2082398 (-) 807 WP_219521584.1 mechanosensitive ion channel family protein -
  KYI09_RS11010 (KYI09_11015) - 2082399..2083262 (-) 864 WP_219521586.1 ParB/RepB/Spo0J family partition protein -
  KYI09_RS11015 (KYI09_11020) - 2083255..2084016 (-) 762 WP_015912450.1 ParA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.61 Da        Isoelectric Point: 4.8835

>NTDB_id=590565 KYI09_RS10980 WP_041636241.1 2078964..2079482(-) (ssbA) [Macrococcoides caseolyticum strain 19Msa0687]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRKVYVTEVVCDSVQFLEPKNTNQSRTNSPSDDYSSYDQGSYGQTQGQNQNYQSSNNQQSNTSAPSNNPFANAT
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=590565 KYI09_RS10980 WP_041636241.1 2078964..2079482(-) (ssbA) [Macrococcoides caseolyticum strain 19Msa0687]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACTAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTTACTTTAGCAGTAAATAGAACATTTACTAATGCGCAAGGAGAACGTCAGGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCTGAAAATGTTAATAATTTCTTGCATAAAGGTAGTTTAGCTGGGGTTGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGACGTAAAGTATATGTTACTGAGGTCGTTTGTGATTCAGTTCAATTCCTTGAACCGAAGAA
CACTAATCAATCTCGTACAAACAGTCCGTCAGATGACTATTCTAGCTATGACCAAGGAAGTTATGGTCAGACACAAGGCC
AGAATCAAAACTATCAGTCATCAAACAATCAACAATCAAATACATCAGCACCATCAAATAACCCATTTGCGAATGCAACA
GGGCCAATTGATATCAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

53.977

100

0.552
  ssb Vibrio cholerae strain A1552

34.759

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366