Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KYI08_RS12030 Genome accession   NZ_CP079950
Coordinates   2254379..2254897 (-) Length   172 a.a.
NCBI ID   WP_041636241.1    Uniprot ID   -
Organism   Macrococcoides caseolyticum strain 19Msa0287     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2249379..2259897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYI08_RS12005 (KYI08_12005) - 2249794..2251062 (-) 1269 WP_086039338.1 nucleobase:cation symporter-2 family protein -
  KYI08_RS12010 (KYI08_12010) xpt 2251062..2251646 (-) 585 WP_101035664.1 xanthine phosphoribosyltransferase -
  KYI08_RS12015 (KYI08_12015) - 2252150..2253169 (+) 1020 WP_101035663.1 DUF2382 domain-containing protein -
  KYI08_RS12020 (KYI08_12020) - 2253270..2253884 (+) 615 WP_015912445.1 GNAT family N-acetyltransferase -
  KYI08_RS12025 (KYI08_12025) rpsR 2254104..2254346 (-) 243 WP_041636240.1 30S ribosomal protein S18 -
  KYI08_RS12030 (KYI08_12030) ssbA 2254379..2254897 (-) 519 WP_041636241.1 single-stranded DNA-binding protein Machinery gene
  KYI08_RS12035 (KYI08_12035) rpsF 2254922..2255212 (-) 291 WP_101035670.1 30S ribosomal protein S6 -
  KYI08_RS12040 (KYI08_12040) - 2255349..2255666 (-) 318 WP_041636242.1 hypothetical protein -
  KYI08_RS12045 (KYI08_12045) ychF 2255690..2256790 (-) 1101 WP_015912447.1 redox-regulated ATPase YchF -
  KYI08_RS12050 (KYI08_12050) - 2256823..2257005 (-) 183 WP_041636244.1 DUF951 domain-containing protein -
  KYI08_RS12055 (KYI08_12055) - 2257007..2257894 (-) 888 WP_086039343.1 mechanosensitive ion channel family protein -
  KYI08_RS12060 (KYI08_12060) - 2257895..2258758 (-) 864 WP_015912449.1 ParB/RepB/Spo0J family partition protein -
  KYI08_RS12065 (KYI08_12065) - 2258751..2259512 (-) 762 WP_015912450.1 ParA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.61 Da        Isoelectric Point: 4.8835

>NTDB_id=590530 KYI08_RS12030 WP_041636241.1 2254379..2254897(-) (ssbA) [Macrococcoides caseolyticum strain 19Msa0287]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRKVYVTEVVCDSVQFLEPKNTNQSRTNSPSDDYSSYDQGSYGQTQGQNQNYQSSNNQQSNTSAPSNNPFANAT
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=590530 KYI08_RS12030 WP_041636241.1 2254379..2254897(-) (ssbA) [Macrococcoides caseolyticum strain 19Msa0287]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACTAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTTACTTTAGCAGTAAATAGAACATTTACTAATGCGCAAGGAGAACGTCAGGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCTGAAAATGTTAATAATTTCTTGCATAAAGGTAGTTTAGCTGGGGTTGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGACGTAAAGTATATGTTACTGAGGTCGTTTGTGATTCAGTTCAATTCCTTGAACCGAAGAA
CACTAATCAATCTCGTACAAACAGTCCGTCAGATGACTATTCTAGCTATGACCAAGGAAGTTATGGTCAGACACAAGGCC
AGAATCAAAACTATCAGTCATCAAACAATCAACAATCAAATACATCAGCACCATCAAATAACCCATTTGCGAATGCAACA
GGGCCAATTGATATCAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

53.977

100

0.552
  ssb Vibrio cholerae strain A1552

34.759

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366