Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KYK13_RS04865 Genome accession   NZ_CP079946
Coordinates   1184706..1185212 (+) Length   168 a.a.
NCBI ID   WP_223642344.1    Uniprot ID   -
Organism   Corallococcus sp. EGB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1179706..1190212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYK13_RS04855 - 1180476..1182074 (-) 1599 WP_223642340.1 ABC transporter substrate-binding protein -
  KYK13_RS04860 dacB 1182209..1184446 (+) 2238 WP_223642342.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  KYK13_RS04865 ssb 1184706..1185212 (+) 507 WP_223642344.1 single-stranded DNA-binding protein Machinery gene
  KYK13_RS04870 - 1185328..1186011 (-) 684 WP_223642346.1 succinate dehydrogenase -
  KYK13_RS04875 - 1186294..1187187 (+) 894 WP_223642347.1 Hsp33 family molecular chaperone HslO -
  KYK13_RS04880 - 1187355..1188047 (+) 693 WP_223642348.1 phosphoribosyltransferase -
  KYK13_RS04885 selB 1188076..1190004 (+) 1929 WP_223642349.1 selenocysteine-specific translation elongation factor -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18032.89 Da        Isoelectric Point: 5.3106

>NTDB_id=590487 KYK13_RS04865 WP_223642344.1 1184706..1185212(+) (ssb) [Corallococcus sp. EGB]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWNDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCFVEG
RLQTREWMDKENKKNYTTEVVATSVTFLGGRDAGEGYGGGSGGGRRQQQGNGGYSQGRDDYGQPPPMGMDDGGGMGGNPG
GADDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=590487 KYK13_RS04865 WP_223642344.1 1184706..1185212(+) (ssb) [Corallococcus sp. EGB]
ATGGCTGGAGGCGTGAACAAGGTCATTCTCATCGGCAACCTCGGGGCGGACCCCGAGGTGCGCTTCACCCCGGGCGGTCA
GGCCGTGGCGAACTTCCGCATCGCGACGAGCGAGAGCTGGAACGACAAGAATGGCCAGAAGCAGGAGCGCACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTGTGCGGCGAGTACCTCAAGAAGGGACGGCAGTGCTTCGTCGAAGGC
CGTCTGCAGACGCGCGAGTGGATGGATAAGGAGAACAAGAAGAACTACACCACCGAGGTCGTCGCCACCTCCGTCACCTT
CCTCGGCGGCCGTGACGCCGGTGAGGGCTACGGCGGCGGCAGCGGCGGCGGGCGCCGGCAGCAGCAGGGCAACGGCGGCT
ACTCCCAGGGACGCGACGACTACGGCCAGCCGCCCCCGATGGGCATGGACGACGGCGGCGGCATGGGCGGCAACCCCGGC
GGCGCGGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.237

100

0.512
  ssb Glaesserella parasuis strain SC1401

43.169

100

0.47
  ssb Neisseria meningitidis MC58

42.775

100

0.44
  ssb Neisseria gonorrhoeae MS11

42.775

100

0.44