Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE/cglE   Type   Machinery gene
Locus tag   KZB15_RS09260 Genome accession   NZ_CP079922
Coordinates   1833976..1834278 (-) Length   100 a.a.
NCBI ID   WP_000413382.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain R36A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1828976..1839278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZB15_RS09230 (KZB15_09235) rnpA 1829655..1830026 (-) 372 WP_000739246.1 ribonuclease P protein component -
  KZB15_RS10715 - 1830043..1830174 (-) 132 WP_000768904.1 hypothetical protein -
  KZB15_RS09235 (KZB15_09240) - 1830175..1831365 (-) 1191 WP_000167757.1 acetate kinase -
  KZB15_RS09240 (KZB15_09245) comYH 1831416..1832369 (-) 954 WP_000345135.1 class I SAM-dependent methyltransferase Machinery gene
  KZB15_RS09245 (KZB15_09250) - 1832430..1833024 (-) 595 Protein_1830 class I SAM-dependent methyltransferase -
  KZB15_RS09250 (KZB15_09255) comGG/cglG 1833161..1833574 (-) 414 WP_000265622.1 competence type IV pilus minor pilin ComGG Machinery gene
  KZB15_RS09255 (KZB15_09260) comGF/cglF 1833552..1834013 (-) 462 WP_000250534.1 competence type IV pilus minor pilin ComGF Machinery gene
  KZB15_RS09260 (KZB15_09265) comGE/cglE 1833976..1834278 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  KZB15_RS09265 (KZB15_09270) comGD/cglD 1834241..1834645 (-) 405 WP_000588026.1 competence type IV pilus minor pilin ComGD Machinery gene
  KZB15_RS09270 (KZB15_09275) comGC/cglC 1834638..1834964 (-) 327 WP_000738626.1 comG operon protein ComGC Machinery gene
  KZB15_RS09275 (KZB15_09280) comGB/cglB 1834966..1835982 (-) 1017 WP_074196785.1 competence type IV pilus assembly protein ComGB Machinery gene
  KZB15_RS09280 (KZB15_09285) comGA/cglA/cilD 1835930..1836871 (-) 942 WP_000249564.1 competence type IV pilus ATPase ComGA Machinery gene
  KZB15_RS09285 (KZB15_09290) - 1836947..1837312 (-) 366 WP_000286415.1 DUF1033 family protein -
  KZB15_RS09290 (KZB15_09295) - 1837463..1838521 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11108.08 Da        Isoelectric Point: 9.7273

>NTDB_id=590146 KZB15_RS09260 WP_000413382.1 1833976..1834278(-) (comGE/cglE) [Streptococcus pneumoniae strain R36A]
MEKLNALRKQKIRAVILLEAVVALAIFASIATLLLGQIQKNRQEEAKILQKEEVLRVAKMALQTGQNQVSINGVEIQVFS
SEKGLEVYHGSEQLLAIKEP

Nucleotide


Download         Length: 303 bp        

>NTDB_id=590146 KZB15_RS09260 WP_000413382.1 1833976..1834278(-) (comGE/cglE) [Streptococcus pneumoniae strain R36A]
ATGGAAAAATTAAACGCATTAAGGAAACAAAAAATTAGGGCAGTGATTTTACTGGAAGCAGTAGTCGCTCTAGCTATCTT
TGCCAGCATTGCGACCCTCCTTTTGGGACAAATTCAAAAAAATAGGCAAGAGGAAGCAAAAATCTTGCAAAAGGAAGAAG
TCTTGAGGGTAGCTAAGATGGCCCTGCAGACGGGGCAAAATCAGGTAAGCATCAACGGAGTTGAGATTCAGGTATTTTCT
AGTGAAAAAGGATTGGAGGTCTACCATGGTTCAGAACAGTTGTTGGCAATCAAAGAGCCATAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(16-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE/cglE Streptococcus pneumoniae Rx1

100

100

1
  comGE/cglE Streptococcus pneumoniae D39

100

100

1
  comGE/cglE Streptococcus pneumoniae R6

100

100

1
  comGE/cglE Streptococcus pneumoniae TIGR4

100

100

1
  comGE/cglE Streptococcus mitis NCTC 12261

98

100

0.98
  comGE/cglE Streptococcus mitis SK321

98

100

0.98
  comYE Streptococcus mutans UA140

44.444

90

0.4
  comYE Streptococcus mutans UA159

44.444

90

0.4