Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KYC43_RS08725 Genome accession   NZ_CP079884
Coordinates   1822125..1822754 (+) Length   209 a.a.
NCBI ID   WP_000793790.1    Uniprot ID   A0A7L6ZPA1
Organism   Escherichia fergusonii strain 6S41-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1817125..1827754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYC43_RS08705 (KYC43_08655) - 1817538..1819298 (-) 1761 WP_000156542.1 Lon protease family protein -
  KYC43_RS08710 (KYC43_08660) matP 1819483..1819938 (+) 456 WP_000877154.1 macrodomain Ter protein MatP -
  KYC43_RS08715 (KYC43_08665) ompA 1819993..1821042 (-) 1050 WP_181591391.1 porin OmpA -
  KYC43_RS08720 (KYC43_08670) sulA 1821399..1821908 (-) 510 WP_181674319.1 SOS-induced cell division inhibitor SulA -
  KYC43_RS08725 (KYC43_08675) sxy/tfoX 1822125..1822754 (+) 630 WP_000793790.1 TfoX/Sxy family DNA transformation protein Regulator
  KYC43_RS08730 (KYC43_08680) yccS 1822717..1824870 (-) 2154 WP_223666081.1 YccS family putative transporter -
  KYC43_RS08735 (KYC43_08685) - 1824890..1825336 (-) 447 WP_002431615.1 YccF domain-containing protein -
  KYC43_RS08740 (KYC43_08690) helD 1825459..1827513 (+) 2055 WP_182211956.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24359.36 Da        Isoelectric Point: 9.5059

>NTDB_id=590005 KYC43_RS08725 WP_000793790.1 1822125..1822754(+) (sxy/tfoX) [Escherichia fergusonii strain 6S41-1]
MKNLSYDRIYKSQEYLASLGRVNYRSLFGSYSLTISDTVFAMVADGELYLRACEQSVQYCVKHTPRWLTFMKKGRLVMLN
YYRVDESLWQDQQQLIRLSRYSLDAALKEKKSLGRKYRLRDLPNITYHLESLLNEAGIKDVSTLRILGAKMCWLRLKQMN
QHITVKILYLLEGAVQDIHEAALPVVRRQELAVWVESLTPDLALLASFD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=590005 KYC43_RS08725 WP_000793790.1 1822125..1822754(+) (sxy/tfoX) [Escherichia fergusonii strain 6S41-1]
ATGAAAAATCTATCCTATGATCGGATCTATAAATCACAAGAATATTTAGCATCCCTGGGCAGGGTGAACTATCGGTCTCT
GTTTGGCAGTTACAGCTTAACTATCAGCGATACCGTGTTTGCGATGGTGGCTGATGGTGAGTTATATCTGCGCGCCTGTG
AACAAAGCGTCCAGTATTGCGTCAAACATACCCCCCGCTGGTTAACGTTTATGAAAAAAGGGCGGTTGGTCATGCTGAAC
TATTACCGGGTAGATGAAAGTTTGTGGCAGGACCAGCAGCAATTAATTCGCCTGTCGCGTTATTCGCTGGATGCAGCTCT
TAAAGAGAAGAAGAGCCTTGGCAGGAAGTATCGCTTAAGAGATCTGCCTAACATTACTTATCATCTTGAGTCGTTGCTCA
ATGAGGCGGGTATTAAAGATGTCAGCACGTTGCGTATTTTGGGGGCAAAAATGTGCTGGTTAAGGTTAAAGCAGATGAAT
CAGCACATTACCGTGAAAATACTCTATTTGCTGGAAGGCGCGGTGCAGGATATTCATGAAGCAGCGCTCCCGGTGGTCCG
TCGCCAGGAGCTTGCTGTATGGGTGGAGTCTCTTACGCCAGATCTGGCGTTGCTGGCGTCATTTGATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L6ZPA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.856

100

0.699