Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   LPB404_RS03460 Genome accession   NZ_CP079821
Coordinates   678410..679069 (-) Length   219 a.a.
NCBI ID   WP_219075045.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 673410..684069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS03440 (LPB404_03440) - 674585..675163 (+) 579 WP_023026442.1 YutD family protein -
  LPB404_RS03445 (LPB404_03445) rlmN 675182..676270 (+) 1089 WP_219075042.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  LPB404_RS03450 (LPB404_03450) - 676248..676781 (+) 534 WP_219075043.1 VanZ family protein -
  LPB404_RS03455 (LPB404_03455) trpB 677216..678403 (+) 1188 WP_219075044.1 tryptophan synthase subunit beta -
  LPB404_RS03460 (LPB404_03460) cclA/cilC 678410..679069 (-) 660 WP_219075045.1 A24 family peptidase Machinery gene
  LPB404_RS03465 (LPB404_03465) - 679223..679750 (+) 528 WP_006596795.1 DNA starvation/stationary phase protection protein -
  LPB404_RS03470 (LPB404_03470) - 679874..680092 (+) 219 WP_023022447.1 YqgQ family protein -
  LPB404_RS03475 (LPB404_03475) - 680131..680475 (+) 345 WP_125375085.1 rhodanese-like domain-containing protein -
  LPB404_RS03480 (LPB404_03480) - 680512..681237 (-) 726 WP_219075046.1 pseudouridine synthase -
  LPB404_RS03485 (LPB404_03485) typA 681476..683323 (+) 1848 WP_061563670.1 translational GTPase TypA -
  LPB404_RS03490 (LPB404_03490) - 683346..683612 (+) 267 WP_023026447.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24985.05 Da        Isoelectric Point: 8.0326

>NTDB_id=589753 LPB404_RS03460 WP_219075045.1 678410..679069(-) (cclA/cilC) [Streptococcus rubneri strain LPB0404]
MINFYFFTVGSCIASFLGLVIDRFPESSIIRPRSHCDHCQQTLRPLDLIPILSQVLFRFRCRYCQSPLPYWYALFEAWSG
LLFLLCYQGLLPISHLFVLLGSCVLTIYDLRSMEYPLLLWLVLHALCLFFTSPTLLMGVFLFLGVLSAVYSIGIGAGDFL
LLATFSLTLSAVQVLLVMQGASLIGLLVFFLKKEKDRIPFVPCLFLSYHAFLFFTIFSR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=589753 LPB404_RS03460 WP_219075045.1 678410..679069(-) (cclA/cilC) [Streptococcus rubneri strain LPB0404]
ATGATCAACTTTTATTTTTTTACAGTCGGTTCCTGTATTGCCTCCTTTTTAGGACTCGTCATCGACCGCTTTCCAGAAAG
CTCCATCATTCGTCCAAGAAGCCATTGCGACCATTGCCAACAGACCTTGAGACCTCTGGACCTGATTCCTATCCTCTCAC
AAGTCCTCTTTCGATTCCGTTGTCGCTACTGCCAGAGTCCGCTTCCTTATTGGTATGCTCTCTTTGAAGCCTGGTCTGGG
CTCCTTTTTTTGCTATGCTATCAGGGACTTCTTCCTATTTCTCATCTTTTCGTTCTGCTTGGCAGTTGTGTTTTGACCAT
CTATGATTTGCGCTCCATGGAGTATCCACTCCTCCTCTGGCTGGTGCTCCACGCTCTTTGCCTGTTTTTCACCAGCCCTA
CCCTCTTGATGGGAGTCTTTCTCTTCTTAGGAGTCCTGTCAGCTGTTTACTCCATCGGCATTGGAGCAGGGGACTTTCTC
TTACTGGCTACTTTCTCTTTGACCCTCTCAGCTGTCCAAGTCCTCCTCGTCATGCAAGGGGCTTCCCTCATTGGTCTCCT
GGTCTTCTTCTTAAAAAAAGAAAAAGACCGGATTCCTTTTGTTCCCTGTCTTTTTCTGAGTTATCACGCTTTTCTGTTTT
TTACAATTTTTAGCAGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae Rx1

53.521

97.26

0.521
  cclA/cilC Streptococcus pneumoniae D39

53.521

97.26

0.521
  cclA/cilC Streptococcus pneumoniae R6

53.521

97.26

0.521
  cclA/cilC Streptococcus mitis NCTC 12261

52.582

97.26

0.511
  cclA/cilC Streptococcus mitis SK321

54.106

94.521

0.511
  cclA/cilC Streptococcus pneumoniae TIGR4

53.623

94.521

0.507