Detailed information NTG0589719

Bioinformatically predicted

Overview

• Name: comB
• Type: Regulator
• Locus tag: LPB404_RS00625
• Genome accession: NZ_CP079821
• Coordinates: 141021..142382 (-)
• Length: 453 a.a.
• NCBI ID: WP_125374689.1
• Uniprot ID: -
• Organism: Streptococcus rubneri strain LPB0404
• Function: transport of ComC (predicted from homology) Competence regulation

Genomic Context

Location: 136021..147382

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPB404_RS00610 (LPB404_00610)	-	136636..137301 (+)	666	WP_257573036.1	DUF4947 domain-containing protein	-
LPB404_RS00615 (LPB404_00615)	-	137516..140311 (-)	2796	WP_219074794.1	YhgE/Pip domain-containing protein	-
LPB404_RS00620 (LPB404_00620)	-	140447..140983 (+)	537	WP_125374688.1	TetR/AcrR family transcriptional regulator	-
LPB404_RS00625 (LPB404_00625)	comB	141021..142382 (-)	1362	WP_125374689.1	bacteriocin secretion accessory protein	Regulator
LPB404_RS00630 (LPB404_00630)	comA	142410..144563 (-)	2154	WP_219074795.1	peptide cleavage/export ABC transporter ComA	Regulator
LPB404_RS00635 (LPB404_00635)	rpsD	144847..145458 (-)	612	WP_003009175.1	30S ribosomal protein S4	-
LPB404_RS00640 (LPB404_00640)	-	146042..146314 (-)	273	WP_006595358.1	Veg family protein	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 50757.20 Da
• Isoelectric Point: 6.3546

>NTDB_id=589719 LPB404_RS00625 WP_125374689.1 141021..142382(-) (comB) [Streptococcus rubneri strain LPB0404]
MMNEKYFESAEFYQKRFHNFASLWVVPCFLLLLFVVGFSVFAKKEVTLTSRGTIEATRVIDQIQSTSNSPIQVNHLKENK
EIKKGEILVEYQEDQEKQQGMSLSQQLDLLKKQEEQLKLLKTSIETGESQFTGNEHFGYDQLFKDYQQQIAILQAQAHQQ
NATIASQNASASSSQAEIGQAIQDQEKRLADYHSLKSALVEGRNLDATHPLYSLYQSYAQQPHGEENSPAQASFISQLDS
QIQQLEANISNYRIQYAGSGSQQAFSTSLDSQIASLKAQQLSKVGQDLLLLSQQIADLDSKVKTQENLLQKTRILAKDEG
VLHLNDETKGASIVAEGTPLAQVYPLIQKEKEVKIVTYIPSKDIATIHVGDRIRFSTQGSKQKPITLEARISSIASSATR
TEQGNFFKIEGVLRLKDHEAKLLRYGLEGKCVLITGEKSYFSFFVDQFLGAGN

Nucleotide

• Length: 1362 bp

>NTDB_id=589719 LPB404_RS00625 WP_125374689.1 141021..142382(-) (comB) [Streptococcus rubneri strain LPB0404]
ATGATGAACGAAAAATATTTTGAAAGCGCAGAATTCTATCAGAAACGTTTCCATAATTTTGCTAGTTTATGGGTAGTTCC
TTGTTTTCTTTTACTACTGTTTGTTGTGGGATTCTCTGTCTTTGCCAAGAAGGAAGTGACCTTGACCAGTCGAGGGACAA
TTGAAGCTACGCGCGTAATTGATCAAATCCAATCAACTAGTAATTCTCCCATTCAAGTCAACCATTTGAAGGAAAATAAA
GAGATTAAAAAGGGAGAAATCTTGGTAGAATACCAAGAGGACCAGGAAAAACAACAAGGAATGAGCTTAAGCCAACAGTT
AGACCTCTTAAAGAAACAGGAGGAACAATTAAAATTATTGAAAACCAGCATTGAGACAGGAGAAAGCCAGTTTACAGGAA
ATGAGCATTTTGGTTATGACCAGCTGTTTAAGGATTACCAGCAACAGATAGCGATTCTCCAAGCTCAAGCTCATCAACAA
AATGCAACCATTGCTTCTCAAAATGCCAGTGCCAGTTCAAGCCAAGCAGAAATTGGCCAAGCTATCCAAGACCAAGAGAA
GCGATTAGCTGATTACCATAGTCTAAAATCAGCTCTAGTAGAGGGGAGAAATCTGGATGCGACTCATCCACTTTACTCTC
TCTACCAGAGTTACGCTCAGCAACCACATGGAGAGGAAAACTCTCCAGCCCAAGCTTCCTTTATTAGTCAGCTGGACAGT
CAAATCCAGCAGTTAGAGGCGAATATTTCGAATTATCGAATCCAATATGCGGGATCCGGAAGCCAACAAGCTTTTTCGAC
CAGTTTAGACAGTCAAATAGCCTCCCTGAAAGCTCAACAGCTGAGTAAGGTCGGACAAGATCTTCTGCTTCTTTCTCAGC
AAATCGCAGATCTAGACAGTAAGGTAAAAACACAAGAAAATCTTCTTCAGAAGACTCGGATTCTAGCGAAGGATGAAGGG
GTGCTGCATTTGAATGATGAAACAAAAGGAGCGAGTATTGTAGCGGAAGGCACTCCTCTGGCTCAAGTTTATCCTCTCAT
TCAGAAAGAAAAAGAAGTCAAGATCGTCACCTATATTCCTTCAAAAGATATAGCCACGATTCATGTGGGAGATCGGATTC
GCTTTAGCACACAGGGTAGTAAACAAAAACCAATTACGCTAGAGGCTCGTATTAGCTCTATTGCTTCGAGTGCAACTCGG
ACAGAACAGGGGAACTTTTTCAAAATAGAGGGAGTCCTTCGTCTCAAGGATCATGAGGCTAAACTTCTGCGGTACGGTTT
GGAAGGGAAGTGTGTCCTGATTACAGGAGAAAAATCTTACTTCAGCTTCTTTGTGGATCAATTCTTAGGAGCAGGGAACT
AA

Domains

Predicted by InterproScan.

• HlyD family secretion protein (HlyD_3) (319-426)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB	Streptococcus gordonii str. Challis substr. CH1	53.54	99.779	0.534
comB	Streptococcus pneumoniae Rx1	49.33	98.896	0.488
comB	Streptococcus pneumoniae D39	49.33	98.896	0.488
comB	Streptococcus mitis SK321	49.33	98.896	0.488
comB	Streptococcus pneumoniae R6	49.33	98.896	0.488
comB	Streptococcus mitis NCTC 12261	49.33	98.896	0.488
comB	Streptococcus pneumoniae TIGR4	48.661	98.896	0.481