Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LPB402_RS09495 Genome accession   NZ_CP079820
Coordinates   1979369..1979656 (+) Length   95 a.a.
NCBI ID   WP_036472233.1    Uniprot ID   A0A4D7WS56
Organism   Neisseria sicca ATCC 29256     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1974369..1984656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS09495 (LPB402_09500) comE 1979369..1979656 (+) 288 WP_036472233.1 ComEA family DNA-binding protein Machinery gene
  LPB402_RS09500 (LPB402_09505) hpnD 1980088..1980936 (+) 849 WP_107769218.1 presqualene diphosphate synthase HpnD -
  LPB402_RS09505 (LPB402_09510) hpnE 1980933..1982240 (+) 1308 WP_107769219.1 hydroxysqualene dehydroxylase HpnE -
  LPB402_RS09510 (LPB402_09515) - 1982336..1983055 (+) 720 WP_070461648.1 SDR family oxidoreductase -
  LPB402_RS09515 (LPB402_09520) thiL 1983242..1984198 (+) 957 WP_107769220.1 thiamine-phosphate kinase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9763.42 Da        Isoelectric Point: 10.4923

>NTDB_id=589708 LPB402_RS09495 WP_036472233.1 1979369..1979656(+) (comE) [Neisseria sicca ATCC 29256]
MKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=589708 LPB402_RS09495 WP_036472233.1 1979369..1979656(+) (comE) [Neisseria sicca ATCC 29256]
ATGAAGAAATTTTTATTTGGTGCATTTGCCGCCGTCTGTGCAGCATTCTCTTTGGCCGCCGTGAACATCAATACCGCATC
TTCTGCCGAACTGGAGGCATTGCCGGGTATCGGTCCGGCTAAGGCGAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTAAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCTGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WS56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.321

85.263

0.463
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

90.526

0.4