Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LPB400_RS10605 Genome accession   NZ_CP079818
Coordinates   2213188..2215320 (-) Length   710 a.a.
NCBI ID   WP_219088963.1    Uniprot ID   -
Organism   Neisseria perflava strain LPB0400     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2208188..2220320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS10580 (LPB400_10590) - 2208578..2209144 (+) 567 WP_049328898.1 NADPH-dependent FMN reductase -
  LPB400_RS10585 (LPB400_10595) - 2209290..2209967 (+) 678 WP_070460434.1 response regulator -
  LPB400_RS10590 (LPB400_10600) - 2209997..2211310 (+) 1314 WP_219088957.1 ATP-binding protein -
  LPB400_RS10595 (LPB400_10605) aroB 2211441..2212520 (-) 1080 WP_219088959.1 3-dehydroquinate synthase -
  LPB400_RS10600 (LPB400_10610) - 2212543..2213055 (-) 513 WP_283122435.1 shikimate kinase -
  LPB400_RS10605 (LPB400_10615) pilQ 2213188..2215320 (-) 2133 WP_219088963.1 type IV pilus secretin PilQ Machinery gene
  LPB400_RS10610 (LPB400_10620) pilP 2215341..2215883 (-) 543 WP_070460442.1 pilus assembly protein PilP Machinery gene
  LPB400_RS10615 (LPB400_10625) pilO 2215899..2216570 (-) 672 WP_070460443.1 type 4a pilus biogenesis protein PilO -
  LPB400_RS10620 (LPB400_10630) pilN 2216570..2217193 (-) 624 WP_070460446.1 PilN domain-containing protein Machinery gene
  LPB400_RS10625 (LPB400_10635) pilM 2217198..2218289 (-) 1092 WP_039862505.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 78066.19 Da        Isoelectric Point: 9.6083

>NTDB_id=589662 LPB400_RS10605 WP_219088963.1 2213188..2215320(-) (pilQ) [Neisseria perflava strain LPB0400]
MKTKHMTKLFAGFSVALAVQTAFAGNITDINVSTLPDNQKIIKIRFDKDVTTPHGFVTSTPARIALDFANTNIRLPEPVL
EYADPLLNQITAAQNNDRARVVLGLNKISQYNTEIRGNEVWVFVNESTDQTNAAVANERAATPSTARAAQTYQAVSAANI
DFRKGVRNSGIIELSAPGFSGQPDIKQQRDRVVVTLKNHTLPTQAQRSLDVADFNTPVQNVTLKRIGNSTQLIIRNNNAN
WDINTKASSGRFVFEVSPKAANTESGGLNQNTNKSFKGRKISLDFQDVEVRTILQILAKESGVNIVASDTVKGTMTLSLK
DVPWDQALDLVMQARNLDMRRQGNIINIAPRDELLAKDKAFLQAEKEIAELGPLYSQTFQLKYKNVEEFRKILRLEEYDS
NNSNTRNTLLSNRGSALIDPATNTLIVTDNRGVIEKFRKLIDELDVPTRQVMVEARIVEAEDTFFRNLGVKFGSGGASGR
NAWGSNWSNAQTNYNTNASFNRGDVGYRTWTLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISNPRVL
TQDRKEAKIESGTEIPYQEASSSGATSITFKKAVLGLTVTPNITPDGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNT
QAMVEDGGTLIVGGIYEEESTNAVNKVPVLGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNVGNNLRY

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=589662 LPB400_RS10605 WP_219088963.1 2213188..2215320(-) (pilQ) [Neisseria perflava strain LPB0400]
ATGAAAACCAAGCACATGACAAAATTATTTGCCGGCTTCAGCGTTGCCCTCGCTGTTCAGACGGCCTTTGCAGGCAATAT
TACCGATATCAACGTTTCCACTTTGCCTGACAACCAAAAAATCATCAAAATCCGTTTCGACAAAGACGTCACCACACCTC
ATGGTTTTGTAACATCTACTCCGGCGCGTATTGCATTGGATTTTGCCAACACCAATATCCGTTTGCCAGAGCCTGTTTTG
GAATATGCCGACCCATTGCTGAATCAAATTACTGCGGCGCAAAACAATGACCGAGCACGCGTGGTTTTGGGTTTAAACAA
AATCAGCCAATACAATACTGAGATTCGCGGCAACGAAGTTTGGGTATTTGTAAACGAATCTACTGATCAAACCAATGCTG
CTGTTGCAAATGAACGTGCGGCTACGCCGTCTACCGCGCGCGCTGCTCAGACTTATCAAGCTGTTTCAGCAGCCAATATC
GATTTCCGCAAAGGCGTACGTAATTCCGGCATTATTGAATTGTCCGCCCCAGGTTTCAGCGGGCAGCCGGACATTAAACA
GCAGCGCGACCGCGTGGTTGTGACCTTGAAAAACCATACGCTGCCGACACAAGCGCAACGCAGTTTGGATGTGGCTGACT
TCAATACCCCTGTACAAAACGTTACGCTCAAACGTATTGGCAATTCTACCCAGCTCATTATCCGCAACAATAATGCGAAT
TGGGACATCAATACCAAAGCTTCTTCCGGCCGTTTTGTATTTGAAGTATCACCTAAAGCCGCCAATACCGAATCCGGCGG
CTTAAACCAAAATACAAACAAATCGTTCAAAGGCCGTAAAATTTCTTTGGATTTCCAAGATGTAGAAGTTCGTACCATCT
TGCAGATTTTGGCAAAAGAATCCGGCGTGAATATTGTTGCCAGCGATACCGTCAAAGGCACCATGACCCTGTCCCTGAAA
GATGTACCTTGGGATCAGGCTTTAGACTTGGTTATGCAGGCGCGTAATTTGGATATGCGCCGTCAAGGCAACATCATTAA
TATTGCGCCTCGCGATGAATTGTTGGCAAAAGATAAAGCCTTCTTACAGGCTGAAAAAGAGATTGCCGAATTGGGTCCGC
TGTATTCTCAAACCTTCCAGTTGAAATACAAAAACGTGGAAGAATTCCGCAAAATTCTGCGTCTGGAAGAATACGACAGC
AATAACTCCAATACCCGCAACACTCTGTTGAGCAACCGAGGCAGCGCCTTAATTGATCCGGCCACCAATACGCTGATCGT
GACCGACAACCGTGGCGTGATTGAGAAATTCCGCAAACTGATTGATGAATTGGACGTTCCAACCCGTCAAGTGATGGTGG
AAGCGCGTATTGTGGAAGCAGAAGATACCTTCTTCCGCAACTTGGGCGTTAAATTCGGTTCCGGTGGTGCAAGTGGCCGT
AACGCATGGGGCAGCAACTGGAGCAATGCACAAACCAACTACAATACCAATGCCTCATTTAACCGTGGCGACGTAGGCTA
CCGCACATGGACTTTAGATCCGAATGTCAGTCTGCCGACCGCAGCCGCAGTCAACAGCATTGCGCTGGTGCGTGCGTTCT
CGTCCGGCGCATTGGGTTTGGAAATCAGCGCGTCTGAAGAACAAGGTAAGAGCAAGACCATTTCCAATCCGCGCGTGCTG
ACACAAGACCGCAAAGAAGCCAAAATCGAATCCGGTACGGAAATTCCTTACCAAGAGGCTTCTTCCAGCGGTGCAACTTC
GATTACCTTCAAGAAAGCTGTTTTGGGTTTGACCGTAACGCCGAACATTACGCCTGACGGTCAAATCATCATGACTGTGA
AGATTAATCGCGATACCCCGATCGACTGTACCGTGGATTCTCTGACAACCAAGTGTATCAACACCAAACACTTGAATACC
CAAGCCATGGTTGAAGATGGCGGCACGCTGATTGTCGGCGGTATTTACGAAGAAGAAAGCACCAATGCAGTGAACAAAGT
ACCTGTTTTGGGCGATATTCCTGTTGTCGGCAATCTGTTCAAATCACGCGGCAAACGTGAAAACCGCCGTGAGCTGTTGA
TCTTCATCACGCCGCGCATTATGGATAATGTGGGTAACAATCTGCGTTACTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-115)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-450)

Bacterial type II and III secretion system protein (Secretin)

(545-702)

Secretin and TonB N terminus short domain (STN)

(303-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

61.161

100

0.668
  pilQ Neisseria meningitidis MC58

60.536

100

0.668
  pilQ Neisseria gonorrhoeae strain FA1090

64.043

100

0.665