Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LPB400_RS10610 Genome accession   NZ_CP079818
Coordinates   2215341..2215883 (-) Length   180 a.a.
NCBI ID   WP_070460442.1    Uniprot ID   -
Organism   Neisseria perflava strain LPB0400     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2210341..2220883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS10595 (LPB400_10605) aroB 2211441..2212520 (-) 1080 WP_219088959.1 3-dehydroquinate synthase -
  LPB400_RS10600 (LPB400_10610) - 2212543..2213055 (-) 513 WP_283122435.1 shikimate kinase -
  LPB400_RS10605 (LPB400_10615) pilQ 2213188..2215320 (-) 2133 WP_219088963.1 type IV pilus secretin PilQ Machinery gene
  LPB400_RS10610 (LPB400_10620) pilP 2215341..2215883 (-) 543 WP_070460442.1 pilus assembly protein PilP Machinery gene
  LPB400_RS10615 (LPB400_10625) pilO 2215899..2216570 (-) 672 WP_070460443.1 type 4a pilus biogenesis protein PilO -
  LPB400_RS10620 (LPB400_10630) pilN 2216570..2217193 (-) 624 WP_070460446.1 PilN domain-containing protein Machinery gene
  LPB400_RS10625 (LPB400_10635) pilM 2217198..2218289 (-) 1092 WP_039862505.1 type IV pilus assembly protein PilM -
  LPB400_RS10630 (LPB400_10640) - 2218443..2220830 (+) 2388 WP_070460449.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20033.58 Da        Isoelectric Point: 5.9502

>NTDB_id=589663 LPB400_RS10610 WP_070460442.1 2215341..2215883(-) (pilP) [Neisseria perflava strain LPB0400]
MKKIILLLSLLPLAACTQSYEDLTQWMTQTRQEAKSKIIPFEEPTVTLPKPYSPPNFKGMNAFDSRRLDTAPKGGNAPDV
NRPKETLEAFSLENMAFVGTLQSGGKVSGFIKVKDHVYTVYPGNYIGQNYGRIQSITEDKIILTEQVEDSYGNWVYRKAE
LPLSSKEADSSNSSDSSNSN

Nucleotide


Download         Length: 543 bp        

>NTDB_id=589663 LPB400_RS10610 WP_070460442.1 2215341..2215883(-) (pilP) [Neisseria perflava strain LPB0400]
ATGAAAAAAATCATCTTACTCTTAAGTCTTCTTCCCTTGGCAGCCTGTACGCAAAGCTATGAAGATTTGACTCAATGGAT
GACGCAAACCCGTCAGGAAGCAAAATCCAAGATTATTCCGTTTGAAGAGCCGACGGTTACATTGCCTAAGCCGTATAGCC
CGCCGAACTTTAAAGGTATGAATGCGTTTGATTCACGCCGTTTGGACACTGCCCCTAAAGGCGGTAATGCGCCGGATGTG
AACCGTCCGAAAGAAACATTGGAAGCCTTCAGTTTGGAAAATATGGCCTTTGTCGGAACGCTGCAAAGCGGCGGCAAAGT
TTCCGGATTTATCAAGGTCAAGGACCATGTTTATACCGTTTATCCCGGAAACTACATCGGTCAGAATTACGGCAGAATCC
AAAGTATTACCGAAGATAAAATTATCTTAACCGAGCAAGTTGAAGACAGCTACGGCAACTGGGTGTACCGAAAGGCCGAA
TTGCCATTGAGCAGTAAAGAGGCAGATTCTTCCAATAGTTCAGATAGTTCGAATTCAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

60.588

94.444

0.572