Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LPB400_RS09465 Genome accession   NZ_CP079818
Coordinates   1976629..1976916 (-) Length   95 a.a.
NCBI ID   WP_036472233.1    Uniprot ID   A0A4D7WS56
Organism   Neisseria perflava strain LPB0400     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1971629..1981916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS09445 (LPB400_09455) thiL 1972087..1973043 (-) 957 WP_107769220.1 thiamine-phosphate kinase -
  LPB400_RS09450 (LPB400_09460) - 1973230..1973949 (-) 720 WP_070461648.1 SDR family oxidoreductase -
  LPB400_RS09455 (LPB400_09465) hpnE 1974045..1975352 (-) 1308 WP_107769219.1 hydroxysqualene dehydroxylase HpnE -
  LPB400_RS09460 (LPB400_09470) hpnD 1975349..1976197 (-) 849 WP_107769218.1 presqualene diphosphate synthase HpnD -
  LPB400_RS09465 (LPB400_09475) comE 1976629..1976916 (-) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9763.42 Da        Isoelectric Point: 10.4923

>NTDB_id=589659 LPB400_RS09465 WP_036472233.1 1976629..1976916(-) (comE) [Neisseria perflava strain LPB0400]
MKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=589659 LPB400_RS09465 WP_036472233.1 1976629..1976916(-) (comE) [Neisseria perflava strain LPB0400]
ATGAAGAAATTTTTATTTGGTGCATTTGCCGCCGTCTGTGCAGCATTCTCTTTGGCCGCCGTGAACATCAATACCGCATC
TTCTGCCGAACTGGAGGCATTGCCGGGTATCGGTCCGGCTAAGGCGAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTAAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCTGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WS56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.321

85.263

0.463
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

90.526

0.4