Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LPB400_RS06375 Genome accession   NZ_CP079818
Coordinates   1325545..1326591 (-) Length   348 a.a.
NCBI ID   WP_003680794.1    Uniprot ID   A0A9X9QZK1
Organism   Neisseria perflava strain LPB0400     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1320545..1331591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS06360 (LPB400_06370) pflA 1321524..1322330 (+) 807 WP_219088484.1 pyruvate formate lyase 1-activating protein -
  LPB400_RS06365 (LPB400_06375) - 1322396..1324108 (-) 1713 WP_219088486.1 proline--tRNA ligase -
  LPB400_RS06370 (LPB400_06380) fghA 1324604..1325452 (+) 849 WP_070461770.1 S-formylglutathione hydrolase -
  LPB400_RS06375 (LPB400_06385) recA 1325545..1326591 (-) 1047 WP_003680794.1 recombinase RecA Machinery gene
  LPB400_RS06380 (LPB400_06390) aroA 1326739..1328031 (-) 1293 WP_070461771.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  LPB400_RS06385 (LPB400_06395) cysG 1328332..1329729 (+) 1398 WP_070461772.1 siroheme synthase CysG -
  LPB400_RS06390 (LPB400_06400) - 1329783..1330388 (-) 606 WP_070461773.1 CoA pyrophosphatase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37603.90 Da        Isoelectric Point: 4.8967

>NTDB_id=589644 LPB400_RS06375 WP_003680794.1 1325545..1326591(-) (recA) [Neisseria perflava strain LPB0400]
MSDEKSKALAAALAQIEKNFGKGSIMKMDGSQQEENLDVISTGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAI
AQCQKNGGICAFIDAEHAFDPIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGEMG
DSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGN
ETKVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDLGVKHDIVEKSGAWYSYNGAKIGQGKDNVRVWLKENPDIANEID
AKIRAAVGINVDITEGKLDDTDGERPEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=589644 LPB400_RS06375 WP_003680794.1 1325545..1326591(-) (recA) [Neisseria perflava strain LPB0400]
ATGTCAGACGAAAAAAGCAAAGCCTTAGCCGCCGCCCTTGCCCAAATCGAAAAAAACTTTGGCAAAGGCTCCATCATGAA
AATGGACGGCAGCCAACAGGAAGAAAACCTTGATGTTATTTCCACCGGCTCCCTCGGCGTGGACTTGGCACTCGGCGTTG
GCGGTCTGCCCCGCGGCCGCGTGGTTGAAATTTTCGGCCCGGAATCCTCCGGTAAAACCACACTCTGTCTCGAAGCCATT
GCCCAATGCCAAAAAAATGGCGGCATCTGCGCATTCATCGATGCCGAGCATGCTTTTGACCCGATTTACGCCCGCAAACT
CGGTGTAAAAGTCGAAGAACTCTATCTCTCCCAACCGGATACCGGCGAACAGGCATTGGAAATCTGCGATACATTGGTAC
GCTCAGGCGGTATCGATATGGTTGTTGTCGACTCCGTAGCCGCACTTGTACCTAAAGCCGAGATCGAAGGCGAAATGGGT
GACAGCCACGTCGGCCTGCAAGCTCGCCTGATGAGCCAAGCCCTCCGCAAACTGACCGGCCACATCAAACGCACCAATAC
ATTGGTTGTTTTCATTAACCAAATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCTGAAACCACGACCGGCGGTAACG
CACTCAAATTCTACGCCTCCGTCCGCCTCGACATCCGCCGTACCGGTCAGATTAAAAAAGGCGATGACGTCATTGGTAAC
GAAACCAAAGTCAAAGTCATCAAAAACAAAGTTGCACCTCCATTCCGTCAAGCCGAATTCGATATTCTTTACGGTGAAGG
CATCAGCTGGGAAGGTGAATTGATCGACTTGGGCGTCAAACATGACATCGTTGAAAAATCTGGTGCATGGTACAGCTACA
ACGGCGCAAAAATCGGCCAAGGTAAAGACAATGTACGCGTTTGGCTGAAAGAAAACCCTGATATCGCCAACGAAATCGAT
GCCAAAATCCGTGCGGCAGTCGGTATCAATGTCGATATTACCGAAGGCAAATTGGACGATACCGACGGCGAACGTCCTGA
GGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

90.23

100

0.902
  recA Neisseria gonorrhoeae MS11

90.23

100

0.902
  recA Neisseria gonorrhoeae strain FA1090

90.23

100

0.902
  recA Ralstonia pseudosolanacearum GMI1000

76.364

94.828

0.724
  recA Acinetobacter baylyi ADP1

71.914

93.103

0.67
  recA Pseudomonas stutzeri DSM 10701

71.692

93.391

0.67
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.988

93.103

0.661
  recA Vibrio cholerae strain A1552

70.988

93.103

0.661
  recA Glaesserella parasuis strain SC1401

70.122

94.253

0.661
  recA Acinetobacter baumannii D1279779

70.37

93.103

0.655
  recA Helicobacter pylori strain NCTC11637

65.569

95.977

0.629
  recA Helicobacter pylori 26695

65.569

95.977

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.061

94.828

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

66.061

94.828

0.626
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.159

94.253

0.624
  recA Latilactobacillus sakei subsp. sakei 23K

61.516

98.563

0.606
  recA Streptococcus mutans UA159

59.259

100

0.598
  recA Streptococcus pneumoniae D39

59.195

100

0.592
  recA Streptococcus pneumoniae Rx1

59.195

100

0.592
  recA Streptococcus pneumoniae R6

59.195

100

0.592
  recA Streptococcus pneumoniae TIGR4

59.195

100

0.592
  recA Streptococcus mitis NCTC 12261

59.593

98.851

0.589
  recA Lactococcus lactis subsp. cremoris KW2

61.212

94.828

0.58
  recA Streptococcus pyogenes NZ131

61.212

94.828

0.58
  recA Streptococcus mitis SK321

60.606

94.828

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.939

93.966

0.563