Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LPB400_RS05650 Genome accession   NZ_CP079818
Coordinates   1175855..1176382 (+) Length   175 a.a.
NCBI ID   WP_107792518.1    Uniprot ID   -
Organism   Neisseria perflava strain LPB0400     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1176496..1177502 1175855..1176382 flank 114


Gene organization within MGE regions


Location: 1175855..1177502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS05650 (LPB400_05655) ssb 1175855..1176382 (+) 528 WP_107792518.1 single-stranded DNA-binding protein Machinery gene
  LPB400_RS05655 (LPB400_05660) - 1176496..1177502 (+) 1007 Protein_1088 IS5 family transposase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 5.7974

>NTDB_id=589642 LPB400_RS05650 WP_107792518.1 1175855..1176382(+) (ssb) [Neisseria perflava strain LPB0400]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLRKGSQVYLEGRI
QSRKYQGKDGIERTAYDIIANEMKMLGGRNDNSGGAPYDDGYNQGGHSSQSSYQQAPQQQYQSAPAQEPPAAPARRPAPV
QPTAPVDDIDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=589642 LPB400_RS05650 WP_107792518.1 1175855..1176382(+) (ssb) [Neisseria perflava strain LPB0400]
ATGTCATTGAATAAAGTTATCCTCATCGGCCGCCTCGGCCGCGACCCGGAAGTCCGCTATATGCCCAACGGCGAGGCCGT
CTGTAACTTCAGCGTTGCCACCAGTGAAACGTGGAACGACCGTAATGGCCAACGCGTAGAACGTACCGAATGGCACAATA
TCACCATGTACCGCAAACTCGCCGAGATCGCCGGTCAATACCTGCGTAAAGGCAGCCAAGTGTACCTGGAAGGCCGTATC
CAAAGCCGTAAATACCAAGGAAAAGACGGCATCGAGCGCACCGCTTACGACATCATCGCCAACGAAATGAAAATGCTCGG
CGGCCGCAACGACAACAGCGGCGGCGCACCATACGATGACGGCTACAACCAAGGCGGTCATTCAAGCCAAAGCAGTTACC
AACAAGCGCCACAACAGCAATACCAATCTGCTCCAGCTCAAGAACCCCCAGCCGCCCCAGCCCGTCGTCCTGCTCCGGTA
CAACCGACTGCTCCGGTTGATGATATCGACGACGATATTCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

81.111

100

0.834
  ssb Neisseria meningitidis MC58

80.556

100

0.829
  ssb Vibrio cholerae strain A1552

50

100

0.509
  ssb Glaesserella parasuis strain SC1401

45.699

100

0.486