Detailed information NTG0589631

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LPB400_RS03180
• Genome accession: NZ_CP079818
• Coordinates: 625658..626545 (-)
• Length: 295 a.a.
• NCBI ID: WP_225905497.1
• Uniprot ID: -
• Organism: Neisseria perflava strain LPB0400
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 620658..631545

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPB400_RS03150 (LPB400_03155)	ftsZ	620919..622118 (+)	1200	WP_070585169.1	cell division protein FtsZ	-
LPB400_RS03155 (LPB400_03160)	ispH	622238..623206 (-)	969	WP_219089364.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
LPB400_RS03160 (LPB400_03165)	lspA	623220..623726 (-)	507	WP_219089366.1	signal peptidase II	-
LPB400_RS03165 (LPB400_03170)	glyQ	623878..624777 (-)	900	WP_003685919.1	glycine--tRNA ligase subunit alpha	-
LPB400_RS03170 (LPB400_03175)	yacG	624859..625041 (-)	183	WP_003682475.1	DNA gyrase inhibitor YacG	-
LPB400_RS03175 (LPB400_03180)	coaE	625038..625658 (-)	621	WP_219089368.1	dephospho-CoA kinase	-
LPB400_RS03180 (LPB400_03185)	pilD	625658..626545 (-)	888	WP_225905497.1	A24 family peptidase	Machinery gene
LPB400_RS03185 (LPB400_03190)	pilG	626547..627788 (-)	1242	WP_219089370.1	type II secretion system F family protein	Machinery gene
LPB400_RS03190 (LPB400_03195)	pilF	627868..629547 (-)	1680	WP_070824176.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LPB400_RS03195 (LPB400_03200)	-	629940..631001 (-)	1062	WP_219089372.1	nucleotidyltransferase domain-containing protein	-

Sequence

Protein

• Length: 295 a.a.
• Molecular weight: 32350.48 Da
• Isoelectric Point: 7.6831

>NTDB_id=589631 LPB400_RS03180 WP_225905497.1 625658..626545(-) (pilD) [Neisseria perflava strain LPB0400]
MLDSIYSAIDALSVLAPFAIPLAVILGLLIGSFLNVVIYRTPIMMEREWTQFSKEHLGIELTDEEKQPFNLRKPDSHCPK
CGSPIRVWQNIPILSYVFLGGKCHACKTHISIRYPLIELLTGVLFGIVAWQYGWSWATIGGLILTAILIALTFIDTDTQY
LPDSLTQPLIWIGLLFNLNDTFVPLHSAVWGAIAGYMSLYTLCAVYKLLTGKIGMGNGDFKLLAALGAWLGVGILPVLIF
MAALVGLLGALIARVGKGQYFAFGPSLAVAGWIILVANAPITQLVQWWLVQSGFR

Nucleotide

• Length: 888 bp

>NTDB_id=589631 LPB400_RS03180 WP_225905497.1 625658..626545(-) (pilD) [Neisseria perflava strain LPB0400]
ATGCTTGATAGTATTTACTCTGCCATCGACGCCCTCTCCGTTCTTGCGCCATTCGCTATTCCTTTAGCCGTTATTTTAGG
ATTACTGATTGGTAGCTTTCTGAACGTCGTCATTTATCGCACGCCGATAATGATGGAGCGTGAATGGACACAATTTTCCA
AAGAGCATTTGGGCATCGAGCTGACAGACGAAGAAAAACAGCCATTTAATCTGCGTAAACCGGATTCACACTGCCCAAAA
TGCGGAAGTCCGATCAGAGTTTGGCAAAATATACCCATCCTCAGCTATGTTTTCCTAGGTGGGAAATGCCACGCCTGCAA
AACCCATATCAGCATACGCTATCCGTTGATTGAGCTGCTGACAGGTGTCTTATTCGGTATTGTCGCGTGGCAATACGGCT
GGTCATGGGCAACTATTGGTGGATTGATTCTGACTGCCATATTGATAGCGCTGACCTTTATCGATACCGATACGCAATAT
TTGCCCGACAGCCTGACTCAGCCCCTAATTTGGATCGGCCTGCTGTTTAATCTGAATGATACATTCGTTCCCCTGCATTC
AGCCGTTTGGGGTGCGATTGCAGGCTATATGAGCCTTTATACTTTATGCGCCGTCTATAAACTTCTGACCGGTAAAATCG
GCATGGGCAATGGCGACTTCAAACTTTTGGCCGCACTCGGTGCATGGCTGGGCGTAGGAATTTTGCCTGTTCTGATCTTT
ATGGCTGCCTTAGTCGGGCTGTTAGGCGCACTCATCGCCCGCGTCGGCAAAGGCCAATATTTTGCTTTTGGTCCCAGCCT
CGCTGTAGCAGGATGGATTATTTTGGTTGCCAATGCACCTATTACCCAACTGGTACAATGGTGGCTCGTACAATCAGGAT
TCCGATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (142-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-132)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	70.671	95.932	0.678
pilD	Vibrio cholerae strain A1552	48.077	88.136	0.424
pilD	Vibrio campbellii strain DS40M4	47.308	88.136	0.417
pilD	Acinetobacter baumannii D1279779	47.41	85.085	0.403
pilD	Acinetobacter nosocomialis M2	47.41	85.085	0.403