Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LPB400_RS01525 Genome accession   NZ_CP079818
Coordinates   291445..291732 (-) Length   95 a.a.
NCBI ID   WP_036472233.1    Uniprot ID   A0A4D7WS56
Organism   Neisseria perflava strain LPB0400     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 286445..296732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS01500 (LPB400_01505) - 286954..287457 (+) 504 WP_070461180.1 hypothetical protein -
  LPB400_RS10965 - 287523..287651 (-) 129 WP_264081748.1 hypothetical protein -
  LPB400_RS01505 (LPB400_01510) - 287675..288538 (-) 864 WP_070461177.1 GNAT family N-acetyltransferase -
  LPB400_RS01510 (LPB400_01515) - 288814..289479 (-) 666 WP_070461175.1 hypothetical protein -
  LPB400_RS01515 (LPB400_01520) pyrI 289670..290128 (-) 459 WP_003684689.1 aspartate carbamoyltransferase regulatory subunit -
  LPB400_RS01520 (LPB400_01525) pyrB 290139..291059 (-) 921 WP_070461172.1 aspartate carbamoyltransferase -
  LPB400_RS01525 (LPB400_01530) comE 291445..291732 (-) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9763.42 Da        Isoelectric Point: 10.4923

>NTDB_id=589625 LPB400_RS01525 WP_036472233.1 291445..291732(-) (comE) [Neisseria perflava strain LPB0400]
MKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=589625 LPB400_RS01525 WP_036472233.1 291445..291732(-) (comE) [Neisseria perflava strain LPB0400]
ATGAAGAAATTTTTATTTGGTGCATTTGCCGCCGTCTGTGCAGCATTCTCTTTGGCCGCCGTGAATATCAATACCGCGTC
TTCTGCCGAACTGGAGGCTTTGCCGGGTATCGGTCCGGCTAAGGCGAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTAAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WS56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.321

85.263

0.463
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

90.526

0.4