Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K210_RS05905 Genome accession   NC_021354
Coordinates   1196001..1196474 (-) Length   157 a.a.
NCBI ID   WP_003774356.1    Uniprot ID   A0AAU9VGH2
Organism   Erysipelothrix rhusiopathiae SY1027     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1191001..1201474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K210_RS05880 (K210_06440) dnaB 1191325..1192695 (-) 1371 WP_003774361.1 replicative DNA helicase -
  K210_RS05885 (K210_06445) rplI 1192707..1193153 (-) 447 WP_013853429.1 50S ribosomal protein L9 -
  K210_RS05890 (K210_06450) - 1193155..1195110 (-) 1956 WP_003774359.1 DHH family phosphoesterase -
  K210_RS05895 (K210_06455) - 1195157..1195696 (-) 540 WP_013853430.1 DUF2232 domain-containing protein -
  K210_RS05900 (K210_06460) rpsR 1195750..1195983 (-) 234 WP_003774357.1 30S ribosomal protein S18 -
  K210_RS05905 (K210_06465) ssb 1196001..1196474 (-) 474 WP_003774356.1 single-stranded DNA-binding protein Machinery gene
  K210_RS05910 (K210_06470) rpsF 1196500..1196790 (-) 291 WP_003774354.1 30S ribosomal protein S6 -
  K210_RS05915 (K210_06475) - 1196929..1197567 (-) 639 WP_003774352.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  K210_RS05920 (K210_06480) - 1197629..1198480 (-) 852 WP_013853431.1 LysR family transcriptional regulator -
  K210_RS05925 (K210_06485) - 1198575..1199138 (+) 564 WP_003774349.1 chromate transporter -
  K210_RS05930 (K210_06490) - 1199122..1199661 (+) 540 WP_003774348.1 chromate transporter -
  K210_RS05935 (K210_06495) lysS 1199699..1201183 (-) 1485 WP_013853432.1 lysine--tRNA ligase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17584.36 Da        Isoelectric Point: 4.4023

>NTDB_id=58961 K210_RS05905 WP_003774356.1 1196001..1196474(-) (ssb) [Erysipelothrix rhusiopathiae SY1027]
MINRTILVGRLTRDPELRKTQTGKSVVSFTVACNRRFGQQDETDFINCVAWNQTADFMANYLLKGALVGLEGRIQSRSYE
DATGKRVYVQEVVVDTLQSLESRAQRQEQGASQGQYQNQNSNQGGSSYTPSYQADPEPSFSMDDEPVLDITSDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=58961 K210_RS05905 WP_003774356.1 1196001..1196474(-) (ssb) [Erysipelothrix rhusiopathiae SY1027]
ATGATTAATCGCACTATATTAGTGGGTCGTTTAACTAGAGATCCAGAACTTCGTAAAACACAAACTGGTAAATCAGTCGT
TTCGTTTACTGTAGCGTGCAACCGCCGCTTTGGACAACAAGATGAAACTGATTTTATCAATTGTGTGGCTTGGAATCAAA
CAGCTGATTTTATGGCAAATTACTTACTAAAGGGTGCTTTAGTAGGTCTAGAAGGTCGAATTCAATCGAGATCATATGAA
GACGCTACCGGTAAACGTGTATATGTTCAAGAGGTTGTTGTGGATACACTTCAATCACTCGAATCACGCGCACAACGTCA
AGAACAAGGCGCAAGCCAAGGTCAATATCAGAATCAAAACAGTAATCAAGGTGGATCAAGTTATACACCTTCATACCAAG
CTGATCCTGAACCATCATTCTCAATGGATGATGAGCCCGTTCTCGATATAACCAGTGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

45.882

100

0.497
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.989

100

0.484
  ssb Neisseria meningitidis MC58

36.994

100

0.408
  ssb Neisseria gonorrhoeae MS11

33.526

100

0.369

Multiple sequence alignment