Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV822_RS06905 Genome accession   NZ_CP079801
Coordinates   1523666..1524154 (-) Length   162 a.a.
NCBI ID   WP_238873007.1    Uniprot ID   -
Organism   Halopseudomonas maritima strain RR6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1518666..1529154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV822_RS06880 (HV822_06870) - 1518847..1519608 (-) 762 WP_238872998.1 DUF3450 domain-containing protein -
  HV822_RS06885 (HV822_06875) - 1519811..1520488 (+) 678 WP_238873000.1 OmpW family protein -
  HV822_RS06890 (HV822_06880) - 1520592..1521467 (-) 876 WP_238873002.1 sugar nucleotide-binding protein -
  HV822_RS06895 (HV822_06885) - 1521839..1522516 (-) 678 WP_238873003.1 histidine phosphatase family protein -
  HV822_RS06900 (HV822_06890) - 1522790..1523197 (-) 408 WP_238873005.1 hypothetical protein -
  HV822_RS06905 (HV822_06895) ssb 1523666..1524154 (-) 489 WP_238873007.1 single-stranded DNA-binding protein Machinery gene
  HV822_RS06910 (HV822_06900) - 1524180..1525550 (-) 1371 WP_238873009.1 MFS transporter -
  HV822_RS06915 (HV822_06905) uvrA 1525690..1528524 (+) 2835 WP_238873011.1 excinuclease ABC subunit UvrA -
  HV822_RS06920 (HV822_06910) rplQ 1528641..1529021 (-) 381 WP_083728619.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17950.97 Da        Isoelectric Point: 5.2870

>NTDB_id=589557 HV822_RS06905 WP_238873007.1 1523666..1524154(-) (ssb) [Halopseudomonas maritima strain RR6]
MARGVNKVILIGNVGGDPEVRYLPNGNAVANVTLATSDSWKDKQTGQMQERTEWHRVVFFGRIAEVVGEYARKGSKLYIE
GRLQTREWEKDGVKRYTTEVVVDMGGQMQLLDSRQGGGGEQGMGQSRPQRPAPQAQPAAQPQQQAPQQSAPDYDSFDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=589557 HV822_RS06905 WP_238873007.1 1523666..1524154(-) (ssb) [Halopseudomonas maritima strain RR6]
ATGGCCAGAGGCGTAAACAAGGTAATTTTGATCGGTAATGTCGGTGGTGATCCGGAAGTGCGCTATCTGCCCAACGGCAA
CGCCGTAGCCAACGTGACGCTGGCCACCAGCGACAGCTGGAAGGACAAGCAGACCGGCCAGATGCAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTTTTCGGTCGTATCGCCGAGGTGGTTGGCGAGTATGCGCGCAAGGGCTCCAAGCTCTATATCGAA
GGTCGCCTGCAGACCCGCGAGTGGGAGAAGGACGGCGTCAAGCGTTACACCACCGAAGTGGTTGTGGATATGGGCGGCCA
GATGCAGCTGCTCGACAGCCGTCAGGGCGGTGGTGGTGAGCAGGGTATGGGGCAATCCCGTCCGCAGCGCCCCGCGCCGC
AAGCCCAGCCGGCCGCTCAGCCGCAACAGCAGGCGCCGCAGCAGTCGGCGCCGGATTACGACAGCTTTGATGATGACATT
CCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.618

100

0.611
  ssb Glaesserella parasuis strain SC1401

46.561

100

0.543
  ssb Neisseria meningitidis MC58

43.258

100

0.475
  ssb Neisseria gonorrhoeae MS11

42.697

100

0.469