Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   KX728_RS07835 Genome accession   NZ_CP079724
Coordinates   1614958..1616925 (-) Length   655 a.a.
NCBI ID   WP_215804339.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609958..1621925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS07820 (KX728_07815) cps4B 1610479..1611210 (-) 732 WP_215804341.1 capsular polysaccharide biosynthesis protein Cps4B -
  KX728_RS07825 (KX728_07820) - 1611212..1612657 (-) 1446 WP_180833764.1 LCP family protein -
  KX728_RS07830 (KX728_07825) amiA3 1612849..1614810 (-) 1962 WP_215804340.1 peptide ABC transporter substrate-binding protein Regulator
  KX728_RS07835 (KX728_07830) amiA 1614958..1616925 (-) 1968 WP_215804339.1 peptide ABC transporter substrate-binding protein Regulator
  KX728_RS07840 (KX728_07835) - 1617095..1618705 (-) 1611 WP_215804338.1 alpha-glucosidase -
  KX728_RS07845 (KX728_07840) - 1618858..1620342 (+) 1485 WP_215804337.1 DUF1846 domain-containing protein -
  KX728_RS07850 (KX728_07845) - 1620477..1621508 (-) 1032 WP_215804336.1 sensor histidine kinase KdpD -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72433.95 Da        Isoelectric Point: 5.0169

>NTDB_id=588995 KX728_RS07835 WP_215804339.1 1614958..1616925(-) (amiA) [Streptococcus oralis strain 34]
MKSKKWLLGAGAVLSAALLLTACGQSEKKADAPKTFSYVYAMDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYAEVKAKDFVTGLKHAADGKSDGLSLIQDSIKGLAEYVSGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSSILYNGPYLLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKKEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGADKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTIYSPEKAKAAFAKAKEELQAKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSIESSLGTENVIVDVLQMTDNEKL
SITSQAKVPAQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGIKRGNDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDVVTAKEYEEAFKKWQQEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=588995 KX728_RS07835 WP_215804339.1 1614958..1616925(-) (amiA) [Streptococcus oralis strain 34]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTTTTGAGTGCAGCCCTACTGTTAACTGCTTGTGGGCAAAGTGA
AAAGAAGGCTGATGCCCCCAAGACATTCTCTTATGTCTACGCTATGGATCCATCTTCTTTGGACTATAGTGTGACGAGCA
AGAGCTCAACCTCTGACGTTATAGCAAACGTTGTTGATGGTCTTTTGGAAAATGATAAGTATGGGAACTTAATTCCATCG
CTTGCAGAAGACTGGTCTGTTTCAAAGGATGGTTTGACTTACACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGATGGAGAAGAATACGCTGAAGTTAAAGCTAAAGACTTTGTTACTGGGCTTAAACATGCTGCTGACGGAAAATCAGATG
GTCTTTCTTTGATTCAGGATTCTATCAAAGGTTTGGCAGAGTATGTTAGTGGTGAGAGCAATGATTTCTCTACTGTAGGA
GTTAAGGCTGTTGATGATTACACGGTAGAATACACGCTCAACAAACCAGAAAGTTTCTGGAATTCTAAGGTTACAACTGC
TACCATGCTTCCAGTTAATGAAGAATTCTTGAATTCTAAAGGGAGCGACTACGGTGCGCCAACACCATCAAGTATTCTTT
ATAACGGTCCTTACCTTTTGAAATCATTGACTTCAAAATCAGTCATTGAATATGAAAAGAATCCAAACTATTGGGACAAG
GACAATGTCAAGATTGACAATATTAAACTAACCTTCTATGATGGTTCCGACCAAGAATCCTTGATTCGAAGCTTTACGCA
AGGTGCCTATACAACAGCTCGTCTCTTCCCAACAAGCTCAAACTTTGAGTCAACTAAGAAAGAGTACGGAGATAAGATTG
TCTACAGTCCCCAAGAAGCGACAAGCTACTATCTCACTGTTAACGTAAACCGCCAGTCTTACAATAAAACAGCTAAAACA
GACGAGGCTCAAAAAACTTCAACAAAAGAAGCTCTTCTCAACAAGAATTTCCGTCAGGCCTTGAACTTTGCCCTTGACCG
TCATTCTTACACGGCTCAGTTGAATGGTGAAGAAGGTGCGGATAAAATTATCCGTAATAGTCTAGTACCTCATGACTACG
TTCAAGTAGGTGAAAAGACATTTGGAGAGTTGGCACAAGCAGAGCTGGTTTCTTATGGAGATCAATGGAAAGATGTAGCC
CTTACAGATGGTAAGGATACGATTTACAGTCCTGAAAAAGCTAAGGCGGCCTTTGCTAAAGCCAAGGAAGAATTGCAAGC
CAAGGGTGTTACCTTCCCAATCCATTTGGATATCCCGGTTGAACAAACAGATGTAATCGCGGTTCAACAAACCAACTCAC
TCAAGCAGTCTATCGAATCATCACTTGGTACGGAGAATGTCATTGTTGATGTCCTTCAAATGACCGATAATGAAAAATTG
AGCATTACTTCTCAAGCTAAGGTTCCAGCACAAAAAGACTATGACTTGAATGGAACTGGTTGGGGACCAGACTATCAAGA
CCCAGCTACCTACCTCAACATTCTTGATGCTAAGAAGGGTTCTGCCCTTAAACACTTGGGGATCAAGCGCGGAAATGATC
CAGAAGTGATGGCTCAAGTTGGACTGGACGAATACAAGAAACTCTTGGATGATGCCGCAGCTGAAACAAGCGACCTCAAT
AAGCGTTACGAAAAATACGCTAAAGCGCAAGCCTGGGTATCGGATAGTTCGCTCTTGATCCCAGTTGCTTCTTCAGGTGG
TTCTCCAACGGTTAGCCGTACTGTACCATTCACAAAAGCATACTCTCAAGTCGGGATCAAGGGAGACCCATTTGTATTCA
AAGGATTGGAGTTGCAAAATGACGTTGTAACTGCAAAAGAATACGAAGAAGCCTTCAAGAAATGGCAACAAGAAAAAATC
GAAACAAATGCCAAATACCAAAAAGAACTTGAAAAACACGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.297

100

0.566
  amiA3 Streptococcus thermophilus LMD-9

55

100

0.554
  amiA3 Streptococcus thermophilus LMG 18311

54.614

100

0.551