Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   KX728_RS07830 Genome accession   NZ_CP079724
Coordinates   1612849..1614810 (-) Length   653 a.a.
NCBI ID   WP_215804340.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1607849..1619810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS07810 (KX728_07805) - 1609076..1609768 (-) 693 WP_061588742.1 tyrosine-protein kinase -
  KX728_RS07815 (KX728_07810) cpsC 1609778..1610470 (-) 693 WP_215804342.1 capsular polysaccharide biosynthesis protein -
  KX728_RS07820 (KX728_07815) cps4B 1610479..1611210 (-) 732 WP_215804341.1 capsular polysaccharide biosynthesis protein Cps4B -
  KX728_RS07825 (KX728_07820) - 1611212..1612657 (-) 1446 WP_180833764.1 LCP family protein -
  KX728_RS07830 (KX728_07825) amiA3 1612849..1614810 (-) 1962 WP_215804340.1 peptide ABC transporter substrate-binding protein Regulator
  KX728_RS07835 (KX728_07830) amiA 1614958..1616925 (-) 1968 WP_215804339.1 peptide ABC transporter substrate-binding protein Regulator
  KX728_RS07840 (KX728_07835) - 1617095..1618705 (-) 1611 WP_215804338.1 alpha-glucosidase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 73126.49 Da        Isoelectric Point: 4.8398

>NTDB_id=588994 KX728_RS07830 WP_215804340.1 1612849..1614810(-) (amiA3) [Streptococcus oralis strain 34]
MIKLKKRLIGTGLVLATGILLSACGQSNTDTSTYSSTFSANPTTFNYLLDYYADNTAVITNLVDGLLENDSYGNLVPALA
EDWFVSSDGLTYTYKLRKDAKWYTADGEEYASVKAQDFVTGIKYAADNKGQAMDLIQNSIKGLNDYVTGVTNDFSTVGVK
ALDDYTVEYTLTRPEPYWNSKTTNSILFPVNEEFLKSKDKDFGTLTPDSILYNGPYLLKDFTSKSSIEYVKNPHYYDHDK
VTIEKVKLAYFDGSDQEMTIRNFESGAYSIAGVYPNSSNYAKTKEKYQDNIVYSLQDKTSWYFNFNVNRKTYNHTAKTTD
EQKKSAQTAILNKNFRQAINFGIDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVTASKLVNYGTEWSGINLA
DAQDAYFNKEKAQAKFAEAKKELEAQGVTFPIHLDVPVDQTNKNAVSGMNSVKQTLETVLGSDNIVIDVQQLSTDDFGNV
AFLAPNPAARDYDLNFDGWVGDYQDPSTYLDPFNAETGFYLKIFGLDAKEDQELIKSLGLDIYTKLLKEADAENKDVAKR
YEKYAEAQAWMIDNSLVMSAMSNGGTASVTKVTPFTRAYSLVGIKGDGNNYKYMRLQKDPVTKKQFDEAKAKWEEESKKA
IEKSQKEFENHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=588994 KX728_RS07830 WP_215804340.1 1612849..1614810(-) (amiA3) [Streptococcus oralis strain 34]
ATGATTAAACTGAAAAAAAGACTAATCGGGACAGGCCTTGTCTTAGCGACAGGGATTTTGCTCTCGGCATGTGGACAGTC
CAACACAGATACTAGCACTTATTCATCAACATTTAGTGCGAATCCGACAACTTTTAACTATCTTCTAGATTATTATGCAG
ATAACACTGCCGTTATTACCAATCTTGTAGATGGTTTGTTAGAAAATGACAGCTATGGAAACCTCGTACCTGCTCTTGCG
GAGGATTGGTTTGTTTCATCAGATGGTTTGACCTATACCTACAAGCTTAGAAAAGATGCCAAGTGGTATACGGCTGACGG
TGAGGAATATGCTTCAGTCAAAGCTCAGGATTTTGTCACTGGGATCAAATATGCTGCGGACAACAAGGGGCAAGCTATGG
ATCTGATCCAAAATTCAATCAAGGGATTGAATGACTATGTGACGGGTGTGACCAATGACTTTTCAACTGTTGGTGTCAAA
GCCTTGGATGACTATACGGTTGAGTACACTTTGACACGACCAGAACCTTATTGGAACTCTAAGACAACCAATAGTATTCT
TTTCCCAGTCAACGAAGAGTTCTTGAAATCAAAGGATAAAGATTTTGGTACCTTGACACCAGACAGTATCCTTTATAATG
GTCCCTATCTGTTAAAAGATTTTACATCAAAATCTTCGATTGAATATGTGAAGAATCCACACTATTATGACCATGACAAA
GTAACCATTGAAAAAGTTAAGTTAGCTTACTTTGATGGGTCAGATCAGGAGATGACCATTCGAAACTTTGAAAGTGGTGC
TTACTCGATTGCAGGAGTCTATCCAAATAGTTCGAACTATGCTAAGACAAAAGAAAAATACCAAGACAATATCGTTTATA
GCTTGCAAGACAAGACATCTTGGTACTTTAACTTTAACGTCAACCGCAAAACCTATAATCATACCGCTAAAACAACGGAT
GAACAAAAGAAATCAGCTCAAACAGCTATCTTAAATAAAAATTTCCGTCAGGCTATCAACTTTGGTATTGATCGAACAGC
CTACTCTGCTCAATCTAACGGTGAAGAAGCAGCGAGTAAAACCCTTCGTAATACTCTAGTTCCTCCAACATTTGTCCAGG
TGGGAGATAAGACCTTTGGAGAAGTAACAGCTTCTAAGCTTGTGAACTACGGAACTGAGTGGTCAGGTATCAATTTGGCA
GATGCTCAAGATGCCTACTTTAACAAGGAAAAGGCCCAAGCAAAATTTGCGGAAGCTAAAAAGGAATTGGAAGCCCAAGG
CGTGACTTTCCCAATCCATTTGGATGTCCCTGTTGATCAGACGAATAAAAATGCGGTCTCTGGTATGAACTCGGTCAAAC
AAACCCTTGAAACAGTACTAGGTTCTGACAATATCGTCATTGATGTTCAACAGCTTTCTACAGATGACTTTGGAAATGTT
GCCTTCCTAGCACCAAATCCAGCAGCTCGTGACTACGACCTAAACTTTGATGGTTGGGTTGGTGATTACCAGGATCCATC
AACTTATCTAGATCCCTTCAATGCTGAAACTGGCTTCTATCTCAAGATTTTTGGTCTTGATGCCAAGGAAGACCAAGAGC
TCATTAAGAGTTTGGGGCTCGATATCTATACGAAACTTCTAAAAGAAGCAGATGCTGAGAATAAAGATGTCGCTAAGCGT
TATGAAAAATACGCTGAAGCTCAAGCTTGGATGATTGACAATTCTCTAGTTATGTCTGCTATGTCAAATGGTGGTACAGC
CTCTGTAACCAAAGTAACTCCGTTTACACGTGCCTACTCCCTAGTGGGAATCAAGGGTGACGGAAATAATTATAAGTACA
TGAGATTACAAAAAGACCCTGTTACCAAGAAACAATTTGATGAAGCCAAGGCTAAGTGGGAAGAAGAAAGTAAAAAAGCT
ATCGAAAAGAGCCAAAAAGAGTTTGAAAACCACGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

51.692

99.541

0.515
  amiA3 Streptococcus thermophilus LMG 18311

51.538

99.541

0.513
  amiA Streptococcus salivarius strain HSISS4

50.457

100

0.507