Detailed information NTG0588970

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: KX728_RS03060
• Genome accession: NZ_CP079724
• Coordinates: 591995..592465 (+)
• Length: 156 a.a.
• NCBI ID: WP_000609595.1
• Uniprot ID: A0A125YWP2
• Organism: Streptococcus oralis strain 34
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 586995..597465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KX728_RS03030 (KX728_03025)	-	587179..587727 (-)	549	WP_215804852.1	NADPH-dependent FMN reductase	-
KX728_RS03035 (KX728_03030)	-	587819..588265 (-)	447	WP_025172773.1	MarR family winged helix-turn-helix transcriptional regulator	-
KX728_RS03040 (KX728_03035)	-	588384..588860 (+)	477	WP_000776858.1	DUF5590 domain-containing protein	-
KX728_RS03045 (KX728_03040)	-	588870..590048 (+)	1179	WP_215804851.1	pyridoxal phosphate-dependent aminotransferase	-
KX728_RS03050 (KX728_03045)	asnS	590201..591544 (+)	1344	WP_252344775.1	asparagine--tRNA ligase	-
KX728_RS03055 (KX728_03050)	rpsF	591693..591983 (+)	291	WP_001151782.1	30S ribosomal protein S6	-
KX728_RS03060 (KX728_03055)	ssbA	591995..592465 (+)	471	WP_000609595.1	single-stranded DNA-binding protein SsbA	Machinery gene
KX728_RS03065 (KX728_03060)	rpsR	592497..592736 (+)	240	WP_000068664.1	30S ribosomal protein S18	-
KX728_RS03070 (KX728_03065)	-	592993..593502 (+)	510	WP_198459393.1	GNAT family N-acetyltransferase	-
KX728_RS03075 (KX728_03070)	wecB	593947..595095 (+)	1149	WP_215804850.1	non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase	-
KX728_RS03080 (KX728_03075)	-	595102..595881 (+)	780	WP_215804849.1	hypothetical protein	-
KX728_RS03085 (KX728_03080)	-	595891..596031 (+)	141	WP_000176307.1	hypothetical protein	-
KX728_RS03090 (KX728_03085)	-	596024..597334 (+)	1311	WP_215804848.1	glycosyltransferase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17182.08 Da
• Isoelectric Point: 5.2065

>NTDB_id=588970 KX728_RS03060 WP_000609595.1 591995..592465(+) (ssbA) [Streptococcus oralis strain 34]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGITGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRGVREGHSGGAYSAPTAGQSAPANPVPDFSRSENPFGATNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=588970 KX728_RS03060 WP_000609595.1 591995..592465(+) (ssbA) [Streptococcus oralis strain 34]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTCATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCTCTTATCGGGATCACAGGCCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTAACAGAAGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGCGG
AGTGCGTGAAGGACATTCAGGTGGCGCTTATTCTGCACCAACTGCTGGCCAATCAGCACCTGCAAACCCAGTACCAGACT
TTTCACGTTCTGAAAATCCATTTGGAGCAACCAATCCATTGGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A125YWP2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	55.233	100	0.609
ssb	Latilactobacillus sakei subsp. sakei 23K	52.841	100	0.596
ssb	Neisseria gonorrhoeae MS11	34.286	100	0.385
ssbB/cilA	Streptococcus pneumoniae TIGR4	50.427	75	0.378
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	69.872	0.378
ssbB/cilA	Streptococcus pneumoniae Rx1	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae R6	49.573	75	0.372
ssbB/cilA	Streptococcus mitis SK321	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae D39	49.573	75	0.372
ssbB/cilA	Streptococcus mitis NCTC 12261	49.573	75	0.372
ssb	Neisseria meningitidis MC58	33.143	100	0.372
ssbB	Bacillus subtilis subsp. subtilis str. 168	54.717	67.949	0.372