Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KXY09_RS19990 Genome accession   NZ_CP079719
Coordinates   4036082..4036600 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain LABIM44     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4031082..4041600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXY09_RS19960 (KXY09_19950) - 4032279..4032659 (-) 381 WP_069006962.1 VOC family protein -
  KXY09_RS19965 (KXY09_19955) - 4032711..4033655 (-) 945 WP_168984691.1 LacI family DNA-binding transcriptional regulator -
  KXY09_RS19970 (KXY09_19960) xth 4033718..4034476 (-) 759 WP_015240985.1 exodeoxyribonuclease III -
  KXY09_RS19975 (KXY09_19965) - 4034473..4035030 (-) 558 WP_168984690.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  KXY09_RS19980 (KXY09_19970) - 4035027..4035608 (-) 582 WP_160222791.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  KXY09_RS19985 (KXY09_19975) rpsR 4035799..4036038 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  KXY09_RS19990 (KXY09_19980) ssbA 4036082..4036600 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  KXY09_RS19995 (KXY09_19985) rpsF 4036640..4036927 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  KXY09_RS20000 (KXY09_19990) ychF 4037039..4038139 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  KXY09_RS20005 (KXY09_19995) - 4038266..4040269 (-) 2004 WP_168984689.1 molybdopterin-dependent oxidoreductase -
  KXY09_RS20010 (KXY09_20000) - 4040316..4040522 (-) 207 WP_012118942.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=588942 KXY09_RS19990 WP_004392979.1 4036082..4036600(-) (ssbA) [Bacillus velezensis strain LABIM44]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=588942 KXY09_RS19990 WP_004392979.1 4036082..4036600(-) (ssbA) [Bacillus velezensis strain LABIM44]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378