Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KXY09_RS17550 Genome accession   NZ_CP079719
Coordinates   3547905..3548594 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain LABIM44     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3542905..3553594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXY09_RS17515 (KXY09_17505) - 3543103..3543585 (-) 483 WP_003151394.1 flagellar protein FlgN -
  KXY09_RS17520 (KXY09_17510) flgM 3543600..3543866 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KXY09_RS17525 (KXY09_17515) - 3543936..3544355 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  KXY09_RS17530 (KXY09_17520) comFC 3544429..3545118 (-) 690 WP_219152091.1 phosphoribosyltransferase family protein Machinery gene
  KXY09_RS17535 (KXY09_17525) - 3545124..3545408 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  KXY09_RS17540 (KXY09_17530) comFA 3545466..3546851 (-) 1386 WP_168984791.1 DEAD/DEAH box helicase Machinery gene
  KXY09_RS17545 (KXY09_17535) - 3546959..3547807 (-) 849 WP_007614105.1 DegV family protein -
  KXY09_RS17550 (KXY09_17540) degU 3547905..3548594 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KXY09_RS17555 (KXY09_17545) degS 3548671..3549834 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  KXY09_RS17560 (KXY09_17550) - 3550057..3550704 (+) 648 WP_007614107.1 YigZ family protein -
  KXY09_RS17565 (KXY09_17555) - 3550709..3551890 (+) 1182 WP_168984790.1 LCP family protein -
  KXY09_RS17570 (KXY09_17560) - 3551989..3553065 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=588935 KXY09_RS17550 WP_003219701.1 3547905..3548594(-) (degU) [Bacillus velezensis strain LABIM44]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=588935 KXY09_RS17550 WP_003219701.1 3547905..3548594(-) (degU) [Bacillus velezensis strain LABIM44]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACCCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1