Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   KXY09_RS17530 Genome accession   NZ_CP079719
Coordinates   3544429..3545118 (-) Length   229 a.a.
NCBI ID   WP_219152091.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM44     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3539429..3550118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXY09_RS17495 (KXY09_17485) fliW 3539520..3539951 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  KXY09_RS17500 (KXY09_17490) - 3539981..3540550 (-) 570 WP_032867077.1 DUF6470 family protein -
  KXY09_RS17505 (KXY09_17495) flgL 3540641..3541558 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  KXY09_RS17510 (KXY09_17500) flgK 3541570..3543087 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  KXY09_RS17515 (KXY09_17505) - 3543103..3543585 (-) 483 WP_003151394.1 flagellar protein FlgN -
  KXY09_RS17520 (KXY09_17510) flgM 3543600..3543866 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KXY09_RS17525 (KXY09_17515) - 3543936..3544355 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  KXY09_RS17530 (KXY09_17520) comFC 3544429..3545118 (-) 690 WP_219152091.1 phosphoribosyltransferase family protein Machinery gene
  KXY09_RS17535 (KXY09_17525) - 3545124..3545408 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  KXY09_RS17540 (KXY09_17530) comFA 3545466..3546851 (-) 1386 WP_168984791.1 DEAD/DEAH box helicase Machinery gene
  KXY09_RS17545 (KXY09_17535) - 3546959..3547807 (-) 849 WP_007614105.1 DegV family protein -
  KXY09_RS17550 (KXY09_17540) degU 3547905..3548594 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KXY09_RS17555 (KXY09_17545) degS 3548671..3549834 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25333.92 Da        Isoelectric Point: 8.2927

>NTDB_id=588933 KXY09_RS17530 WP_219152091.1 3544429..3545118(-) (comFC) [Bacillus velezensis strain LABIM44]
MNCLLCDSPISSSLTWRSLFSLAPEQEMCNICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSEMLASLLGRPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=588933 KXY09_RS17530 WP_219152091.1 3544429..3545118(-) (comFC) [Bacillus velezensis strain LABIM44]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCACCCGAGCAAGA
GATGTGCAACATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGATGCTGGCCTCTCTGCTCGGAAGGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598