Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KXY09_RS17540 Genome accession   NZ_CP079719
Coordinates   3545466..3546851 (-) Length   461 a.a.
NCBI ID   WP_168984791.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM44     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3540466..3551851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXY09_RS17505 (KXY09_17495) flgL 3540641..3541558 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  KXY09_RS17510 (KXY09_17500) flgK 3541570..3543087 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  KXY09_RS17515 (KXY09_17505) - 3543103..3543585 (-) 483 WP_003151394.1 flagellar protein FlgN -
  KXY09_RS17520 (KXY09_17510) flgM 3543600..3543866 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KXY09_RS17525 (KXY09_17515) - 3543936..3544355 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  KXY09_RS17530 (KXY09_17520) comFC 3544429..3545118 (-) 690 WP_219152091.1 phosphoribosyltransferase family protein Machinery gene
  KXY09_RS17535 (KXY09_17525) - 3545124..3545408 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  KXY09_RS17540 (KXY09_17530) comFA 3545466..3546851 (-) 1386 WP_168984791.1 DEAD/DEAH box helicase Machinery gene
  KXY09_RS17545 (KXY09_17535) - 3546959..3547807 (-) 849 WP_007614105.1 DegV family protein -
  KXY09_RS17550 (KXY09_17540) degU 3547905..3548594 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KXY09_RS17555 (KXY09_17545) degS 3548671..3549834 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  KXY09_RS17560 (KXY09_17550) - 3550057..3550704 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52574.88 Da        Isoelectric Point: 10.1584

>NTDB_id=588934 KXY09_RS17540 WP_168984791.1 3545466..3546851(-) (comFA) [Bacillus velezensis strain LABIM44]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGQLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKYFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=588934 KXY09_RS17540 WP_168984791.1 3545466..3546851(-) (comFA) [Bacillus velezensis strain LABIM44]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCTTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCAACTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAATATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631
  comFA Latilactobacillus sakei subsp. sakei 23K

40.097

89.805

0.36