Detailed information NTG0588824

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: KXJ79_RS03675
• Genome accession: NZ_CP079716
• Coordinates: 851500..852837 (-)
• Length: 445 a.a.
• NCBI ID: WP_005758474.1
• Uniprot ID: -
• Organism: Pseudomonas amygdali strain HS1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 846500..857837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KXJ79_RS03665 (KXJ79_03665)	-	849023..850132 (-)	1110	WP_219170917.1	efflux RND transporter periplasmic adaptor subunit	-
KXJ79_RS03670 (KXJ79_03670)	-	850214..850831 (-)	618	WP_004663466.1	TetR/AcrR family transcriptional regulator	-
KXJ79_RS03675 (KXJ79_03675)	pilR	851500..852837 (-)	1338	WP_005758474.1	sigma-54 dependent transcriptional regulator	Regulator
KXJ79_RS03680 (KXJ79_03680)	pilS	852840..854432 (-)	1593	WP_219170918.1	PAS domain-containing sensor histidine kinase	Regulator
KXJ79_RS03685 (KXJ79_03685)	-	854422..854660 (-)	239	Protein_728	PP0621 family protein	-
KXJ79_RS03690 (KXJ79_03690)	-	854790..855812 (-)	1023	WP_005733851.1	outer membrane protein assembly factor BamD	-
KXJ79_RS03695 (KXJ79_03695)	rluD	855962..856924 (+)	963	WP_002551999.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
KXJ79_RS03700 (KXJ79_03700)	pgeF	856921..857649 (+)	729	WP_122259804.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49788.88 Da
• Isoelectric Point: 6.5777

>NTDB_id=588824 KXJ79_RS03675 WP_005758474.1 851500..852837(-) (pilR) [Pseudomonas amygdali strain HS1]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPCAQPARSIDSRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGSQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGTQPVARLNAQALDTLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQEPNSPSLADIDNLED
YLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=588824 KXJ79_RS03675 WP_005758474.1 851500..852837(-) (pilR) [Pseudomonas amygdali strain HS1]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGACGAGCCGGATATCCGCGAACTGCTGGAGATCACTCTGGGGCGCAT
GAAACTCGACACCCGATGCGCCCGTAACGTTGCCGAGGCCCACGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGTCTGCCCGACGGCAACGGCCTTGAGCTGGTGCAGCATATCCAGCACGGCTACCCCCATGTGCCAGTGGCG
ATGATCACTGCCCACGGCAACCTGGACACCGCGATTAATGCGCTCAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
TGACCTCGGCAGGCTGCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCTTGCGCCCAGCCAGCCCGCAGCATCGACAGCC
GCCTGCTGGGCGACTCGCTGGCGATGCGTACCTTGCGCAACCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAATCGGGCAGTGGCAAGGAGCTTGTAGCGCGGCTGATCCACGAGCAGGGTCCGCGCATCGACAAACCGTT
CATACCGGTGAATTGCGGGGCCATTCCTTCCGAGCTGATGGAGAGTGAATTCTTTGGCCATCGCAAGGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCACATACCGGGACGCTGTTTCTCGACGAGGTGGCCGACCTACCG
CTGGCCATGCAGGTAAAGCTGTTGCGAGCCATCCAGGAAAAATCAATCCGCAGTGTAGGCAGCCAGCAAGAGCAGATTGT
GGACGTACGCATTCTGTGCGCCACGCACAAGAACCTGAACGCAGAGGTAGCGGCAGGTCGCTTCCGCCAGGATCTGTATT
ACCGGTTGAACGTGATCGAAGTGCGCGTCCCCTCATTGCGCGAGCGGCGCGAGGACATCGATCAACTGGCAGCCAGTGTT
CTAAAGCGACTTGCTGGCAATGGCACGCAACCGGTGGCGCGCCTGAATGCGCAGGCGCTGGACACGCTGAAGAGCTACCG
ATTCCCCGGCAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACGCTCTGTGAAAACGATGAAATCCACGCCA
GCGATCTGCGCCTGGCAGAGTCCGCCAGCCCCCAGGAGCCCAACAGCCCTAGCCTGGCCGACATCGACAACCTTGAAGAT
TACCTGGAAAGCATCGAGCGCAAGCTGATTCTGCAGGCCCTGGAAGAAACCCGCTGGAACCGTACCGCCGCGGCAGAAAG
GCTCAGCTTGTCCTTCAGATCGCTGCGTTACCGGCTGAAGAAACTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.703	99.775	0.775
pilR	Acinetobacter baumannii strain A118	48.596	100	0.506
luxO	Vibrio cholerae strain A1552	37.162	99.775	0.371