Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KXJ79_RS03680 Genome accession   NZ_CP079716
Coordinates   852840..854432 (-) Length   530 a.a.
NCBI ID   WP_219170918.1    Uniprot ID   -
Organism   Pseudomonas amygdali strain HS1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 847840..859432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXJ79_RS03665 (KXJ79_03665) - 849023..850132 (-) 1110 WP_219170917.1 efflux RND transporter periplasmic adaptor subunit -
  KXJ79_RS03670 (KXJ79_03670) - 850214..850831 (-) 618 WP_004663466.1 TetR/AcrR family transcriptional regulator -
  KXJ79_RS03675 (KXJ79_03675) pilR 851500..852837 (-) 1338 WP_005758474.1 sigma-54 dependent transcriptional regulator Regulator
  KXJ79_RS03680 (KXJ79_03680) pilS 852840..854432 (-) 1593 WP_219170918.1 PAS domain-containing sensor histidine kinase Regulator
  KXJ79_RS03685 (KXJ79_03685) - 854422..854660 (-) 239 Protein_728 PP0621 family protein -
  KXJ79_RS03690 (KXJ79_03690) - 854790..855812 (-) 1023 WP_005733851.1 outer membrane protein assembly factor BamD -
  KXJ79_RS03695 (KXJ79_03695) rluD 855962..856924 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KXJ79_RS03700 (KXJ79_03700) pgeF 856921..857649 (+) 729 WP_122259804.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58036.89 Da        Isoelectric Point: 6.9685

>NTDB_id=588825 KXJ79_RS03680 WP_219170918.1 852840..854432(-) (pilS) [Pseudomonas amygdali strain HS1]
MTADTPSLASPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQLF
SLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLEELNALILQRMRTGILVLDANRQVLLANQGALTLLGHERLVGQVID
AYSPQLVERLRQWLVNPIMVPRSVTTSPIGPVLQPSFAALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQSGRIDRVIENVLQLSRRRESQPELLDLKTWLENFVAEFRSAAMAG
QSVHVEISPGTLTTRMDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDRQSDLPILEVQDDGPGVSEQHLAKLFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYVPRQGGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=588825 KXJ79_RS03680 WP_219170918.1 852840..854432(-) (pilS) [Pseudomonas amygdali strain HS1]
GTGACCGCTGACACGCCCTCGCTTGCCAGCCCACAGGCGCAAAGGATTCTGCGGCTTTACCACCTTTATCGACTGACCAT
CGGCGTGGTACTGGTCCTGCTGATTTCCAGCAGTCTGGAAACCGAACTGTTGCAACTGGCCAATCCAAACCTGTTCCGCT
CGGGTTGCTGGCTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAGCGTCCCAGCCGTCAGGCGCAGCTGTTC
AGTCTGGCAATGACTGACGCAATCATGCTCTCGGCGCTGTTCTACGCGGCGGGTGGCCCGTCCAGCGGCATCGGCAATCT
GTTGATTGCTTCCGTGGCAATCAGCAATGTGTTGCTACGGGGCCGTATCGGTCTGCTGATCGCCGCCGTTTCTGCCATCG
GCATCATCTACCTGACGTTCTATATCAGCTTCGGTACACCGTCGGTTTCCAATGACTACGTGCAGGCCGGCTCTCTGGGT
GCCCTGTGCTTCGCCGCCGCACTGCTGGTGCAGGCGCTGACAGCGCGCATGCAAGTCAGCGAAGTGCTGGCCGAACAGCG
TGCAGCGGATGTCGACAGCCTTGAAGAACTCAACGCGCTGATCCTGCAACGCATGCGTACCGGCATTCTGGTACTGGATG
CCAACCGTCAGGTGCTGCTGGCCAATCAAGGTGCCCTTACCCTACTGGGCCACGAGCGACTGGTCGGCCAGGTTATCGAC
GCTTACTCGCCGCAGTTGGTGGAACGCCTGCGCCAGTGGCTCGTCAACCCGATCATGGTGCCGCGCAGCGTCACGACTTC
ACCCATCGGGCCGGTGCTGCAACCGAGCTTTGCCGCACTCAATCGTGGCGATCAGCGCCAGACGCTGATCTTTCTTGAAG
ACCTGTCGCAAATTGCTCATCAGGCGCAGCAGCTCAAGCTCGCCGCGCTGGGACGCCTGACCGCCGGGATTGCCCACGAG
ATACGCAACCCGCTGGGCGCAGTCAGCCATGCCGCACAGTTGCTCAACGAGTCGGAAGAACTGAGCGCAGCGGACCGACG
CCTGGGGCAGATCATTCATGACCAGTCGGGGCGTATTGATCGGGTCATCGAAAATGTTCTGCAACTGTCACGCCGGCGTG
AGTCGCAACCCGAACTGCTGGACCTGAAAACCTGGCTGGAAAACTTTGTTGCCGAGTTTCGCAGCGCCGCCATGGCCGGA
CAGTCGGTTCATGTCGAAATCAGTCCCGGCACGCTGACAACCCGCATGGATTCCGGGCAACTGACACAGATCATGACCAA
CCTGCTACAGAACGGCCTGCGCTACAGCGGCAGAAATCATTCGTCAGCGCAGGTCTGGCTGAAGCTGCATCACGACCGAC
AAAGCGATTTGCCCATTCTGGAAGTACAGGACGACGGGCCAGGGGTCAGCGAGCAACATTTGGCCAAGCTATTCGAGCCG
TTTTTCACCACGGAAAGCAAAGGCACCGGTCTTGGTCTATATCTGTCACGCGAGCTGTGCGAAAGCAATCAGGCGCACCT
GGAATACGTCCCGCGGCAAGGTGGCGGCAGTTGTCTGCGCATAACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.394

100

0.615