Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BRPE64_RS01295 Genome accession   NC_021287
Coordinates   266689..267222 (+) Length   177 a.a.
NCBI ID   WP_016344188.1    Uniprot ID   R4WVT7
Organism   Caballeronia insecticola     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 261689..272222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRPE64_RS01285 (BRPE64_ACDS02660) uvrA 262083..264956 (-) 2874 WP_016344186.1 excinuclease ABC subunit UvrA -
  BRPE64_RS01290 (BRPE64_ACDS02670) - 265367..266569 (+) 1203 WP_016344187.1 MFS transporter -
  BRPE64_RS01295 (BRPE64_ACDS02680) ssb 266689..267222 (+) 534 WP_016344188.1 single-stranded DNA-binding protein Machinery gene
  BRPE64_RS01300 (BRPE64_ACDS02700) - 267904..268530 (+) 627 WP_016344190.1 response regulator transcription factor -
  BRPE64_RS01305 (BRPE64_ACDS02710) - 268653..269333 (+) 681 WP_044041067.1 response regulator transcription factor -
  BRPE64_RS01310 (BRPE64_ACDS02720) - 269485..270105 (+) 621 WP_016344192.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18339.17 Da        Isoelectric Point: 5.9603

>NTDB_id=58853 BRPE64_RS01295 WP_016344188.1 266689..267222(+) (ssb) [Caballeronia insecticola]
MASVNKVILVGNLGADPETRYLPSGDAVANIRLATTDRYKDKSSGEFKELTEWHRVAFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKWTDQAGQERYSTEIVADQMQMLGGRGGAGGGDDGGYSRSAPMERSGGGGAGGGGRAPAGGRASGGGASGGASRP
SAPAGGGFDDMDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=58853 BRPE64_RS01295 WP_016344188.1 266689..267222(+) (ssb) [Caballeronia insecticola]
ATGGCATCAGTCAACAAGGTCATTCTCGTGGGCAATCTGGGAGCCGACCCGGAAACCCGCTACCTGCCGAGCGGCGACGC
CGTGGCCAATATCCGTCTCGCGACGACCGACCGCTACAAGGACAAGTCGTCGGGTGAGTTCAAGGAACTGACGGAATGGC
ATCGCGTCGCGTTTTTCGGCCGTCTCGCGGAGATCGTGAACGAATATTTGAAGAAAGGTTCGTCGGTATATATCGAGGGG
CGCATCCGCACGCGCAAGTGGACCGATCAGGCGGGCCAGGAGCGCTATTCGACGGAAATCGTCGCCGATCAGATGCAGAT
GCTCGGTGGTCGCGGTGGCGCGGGCGGCGGCGATGACGGCGGTTACAGCCGCAGCGCCCCGATGGAGCGCTCTGGTGGCG
GCGGTGCCGGTGGCGGCGGTCGCGCGCCTGCGGGTGGTCGTGCGAGCGGCGGCGGCGCAAGCGGTGGTGCCAGCCGTCCG
AGCGCGCCGGCCGGCGGCGGCTTCGACGACATGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R4WVT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50

100

0.52
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.497
  ssb Neisseria meningitidis MC58

42.162

100

0.441
  ssb Neisseria gonorrhoeae MS11

43.82

100

0.441

Multiple sequence alignment