Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PFLCHA0_RS27435 Genome accession   NC_021237
Coordinates   6134580..6135089 (-) Length   169 a.a.
NCBI ID   WP_011063767.1    Uniprot ID   -
Organism   Pseudomonas protegens CHA0     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6129580..6140089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFLCHA0_RS27420 (PFLCHA0_c55010) - 6130299..6131585 (+) 1287 WP_015637223.1 hypothetical protein -
  PFLCHA0_RS27425 (PFLCHA0_c55020) - 6131589..6133415 (+) 1827 WP_015637224.1 hypothetical protein -
  PFLCHA0_RS27430 (PFLCHA0_c55030) - 6133430..6134482 (+) 1053 WP_041752624.1 hypothetical protein -
  PFLCHA0_RS27435 (PFLCHA0_c55040) ssb 6134580..6135089 (-) 510 WP_011063767.1 single-stranded DNA-binding protein Machinery gene
  PFLCHA0_RS27440 (PFLCHA0_c55050) - 6135099..6136493 (-) 1395 WP_015637226.1 MFS transporter -
  PFLCHA0_RS27445 (PFLCHA0_c55060) uvrA 6136672..6139506 (+) 2835 WP_019094235.1 excinuclease ABC subunit UvrA -
  PFLCHA0_RS27450 (PFLCHA0_c55070) bfr 6139625..6140089 (-) 465 WP_015637228.1 bacterioferritin -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18784.96 Da        Isoelectric Point: 5.9455

>NTDB_id=58798 PFLCHA0_RS27435 WP_011063767.1 6134580..6135089(-) (ssb) [Pseudomonas protegens CHA0]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPAPQPQRESRPAPQQAAPQPAPDF
DSFDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=58798 PFLCHA0_RS27435 WP_011063767.1 6134580..6135089(-) (ssb) [Pseudomonas protegens CHA0]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGCGCACCGAGT
GGCACCGCGTGTCGATGTTCGGCAAGGTCGCGGAGATCGCCGGTGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGTGGCCGTCCACAGGGCGACCAGCAAGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCCCGTCCTGCTCCGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCCGCTCCGCAGCCGGCTCCGGACTTC
GACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.932

100

0.586
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.497
  ssb Neisseria meningitidis MC58

47.159

100

0.491

Multiple sequence alignment