Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | KX724_RS05085 | Genome accession | NZ_CP079106 |
| Coordinates | 1117371..1118534 (+) | Length | 387 a.a. |
| NCBI ID | WP_049467229.1 | Uniprot ID | - |
| Organism | Stenotrophomonas indicatrix strain D763 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1112371..1123534
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KX724_RS05055 (KX724_05055) | soxR | 1112548..1112982 (+) | 435 | WP_032951587.1 | redox-sensitive transcriptional activator SoxR | - |
| KX724_RS05060 (KX724_05060) | - | 1113020..1113622 (-) | 603 | WP_025874043.1 | short chain dehydrogenase | - |
| KX724_RS05065 (KX724_05065) | - | 1113721..1114596 (+) | 876 | WP_218788823.1 | LysR family transcriptional regulator | - |
| KX724_RS05070 (KX724_05070) | proC | 1114651..1115472 (-) | 822 | WP_140224769.1 | pyrroline-5-carboxylate reductase | - |
| KX724_RS05075 (KX724_05075) | - | 1115489..1116166 (-) | 678 | WP_218788825.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| KX724_RS05080 (KX724_05080) | pilT | 1116254..1117291 (+) | 1038 | WP_004147099.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| KX724_RS05085 (KX724_05085) | pilU | 1117371..1118534 (+) | 1164 | WP_049467229.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| KX724_RS05090 (KX724_05090) | - | 1118676..1119659 (+) | 984 | WP_025874038.1 | aldo/keto reductase | - |
| KX724_RS05095 (KX724_05095) | - | 1119717..1120616 (-) | 900 | WP_059063284.1 | LysR family transcriptional regulator | - |
| KX724_RS05100 (KX724_05100) | - | 1120894..1121106 (+) | 213 | WP_025874036.1 | DUF4287 domain-containing protein | - |
| KX724_RS05105 (KX724_05105) | - | 1121511..1122218 (+) | 708 | WP_025874035.1 | YitT family protein | - |
| KX724_RS05110 (KX724_05110) | - | 1122293..1122838 (-) | 546 | WP_025874034.1 | DNA-3-methyladenine glycosylase I | - |
Sequence
Protein
Download Length: 387 a.a. Molecular weight: 43182.62 Da Isoelectric Point: 6.6616
>NTDB_id=587799 KX724_RS05085 WP_049467229.1 1117371..1118534(+) (pilU) [Stenotrophomonas indicatrix strain D763]
MPHWEPAVNTTATTIDFTSFLKLMAHQRASDLFITAGMPPAIKVNGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKT
HECNFAIGLSGVGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPIIKTLAMTKRGIILFVGATGTGKSTSLAAMIGY
RNQNSTGHIITIEDPIEFVHKHEGCIITQREVGIDTDSWEAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLC
TLHANNANQAMDRIVNFFPEDRRNQLLMDLSLNLKGVVAQQLIPSPDGRSRKVAMEILLGTPLVQDYIRDGEIHKLKELM
KESVQLGMKTFDQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDARTLSQGLDGVEISEVR
MPHWEPAVNTTATTIDFTSFLKLMAHQRASDLFITAGMPPAIKVNGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKT
HECNFAIGLSGVGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPIIKTLAMTKRGIILFVGATGTGKSTSLAAMIGY
RNQNSTGHIITIEDPIEFVHKHEGCIITQREVGIDTDSWEAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLC
TLHANNANQAMDRIVNFFPEDRRNQLLMDLSLNLKGVVAQQLIPSPDGRSRKVAMEILLGTPLVQDYIRDGEIHKLKELM
KESVQLGMKTFDQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDARTLSQGLDGVEISEVR
Nucleotide
Download Length: 1164 bp
>NTDB_id=587799 KX724_RS05085 WP_049467229.1 1117371..1118534(+) (pilU) [Stenotrophomonas indicatrix strain D763]
ATGCCCCATTGGGAGCCCGCCGTGAACACCACCGCGACCACCATCGATTTCACCTCGTTCCTCAAGCTGATGGCGCACCA
GCGCGCCTCGGACCTGTTCATCACTGCCGGCATGCCGCCGGCGATCAAGGTCAACGGCAAGATTTCGCCGATCACCCAGA
CGCCACTGACGCCGCAGCAGAGCCGCGACCTGGTGCTGAACGTGATGACGCCGGCGCAGCGCGAGGAATTCGAAAAGACC
CACGAATGCAACTTCGCCATCGGCCTGTCCGGCGTCGGCCGCTTCCGCGTGAGCTGCTTCTACCAGCGCAACCAGGTCGG
CATGGTGCTGCGTCGCATCGAGACGCGCATTCCCACCGTGGAAGAGCTGAGCCTGCCGCCGATCATCAAGACGCTGGCGA
TGACCAAGCGCGGCATCATCCTGTTCGTCGGCGCTACCGGTACCGGTAAATCAACCTCGCTGGCAGCGATGATCGGTTAC
CGCAACCAGAATTCGACCGGGCACATCATCACCATCGAAGATCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCAT
CACCCAGCGCGAAGTCGGCATCGATACCGACAGCTGGGAAGCCGCGCTGAAGAACACCCTGCGCCAGGCGCCGGATGTGA
TCATGATCGGCGAGGTGCGTACCCGCGAGGGCATGGACCACGCCATCGCCTTCGCTGAAACCGGTCACCTGGTGCTGTGC
ACGCTGCACGCCAACAACGCCAACCAGGCGATGGACCGCATCGTCAACTTCTTCCCGGAAGATCGCCGCAACCAGCTGTT
GATGGATCTGTCGCTGAACCTGAAGGGCGTGGTCGCGCAGCAGTTGATTCCTTCGCCGGATGGCCGTTCGCGCAAGGTGG
CGATGGAGATCCTGCTGGGCACGCCGCTGGTGCAGGACTACATCCGCGACGGCGAGATCCACAAGCTGAAGGAGCTGATG
AAGGAATCGGTCCAGCTGGGCATGAAGACCTTCGACCAGAGCCTGTTCGAGCTGTACCAGGCCGGTGAGATCAGCTACGA
GGACGCGCTGCGCTACGCCGATTCGCAGAACGAAGTGCGCCTGCGCATCAAGCTCAGCCAGGGCGGCGATGCCCGCACCC
TGTCGCAGGGGTTGGATGGCGTGGAGATTTCAGAGGTCCGGTAA
ATGCCCCATTGGGAGCCCGCCGTGAACACCACCGCGACCACCATCGATTTCACCTCGTTCCTCAAGCTGATGGCGCACCA
GCGCGCCTCGGACCTGTTCATCACTGCCGGCATGCCGCCGGCGATCAAGGTCAACGGCAAGATTTCGCCGATCACCCAGA
CGCCACTGACGCCGCAGCAGAGCCGCGACCTGGTGCTGAACGTGATGACGCCGGCGCAGCGCGAGGAATTCGAAAAGACC
CACGAATGCAACTTCGCCATCGGCCTGTCCGGCGTCGGCCGCTTCCGCGTGAGCTGCTTCTACCAGCGCAACCAGGTCGG
CATGGTGCTGCGTCGCATCGAGACGCGCATTCCCACCGTGGAAGAGCTGAGCCTGCCGCCGATCATCAAGACGCTGGCGA
TGACCAAGCGCGGCATCATCCTGTTCGTCGGCGCTACCGGTACCGGTAAATCAACCTCGCTGGCAGCGATGATCGGTTAC
CGCAACCAGAATTCGACCGGGCACATCATCACCATCGAAGATCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCAT
CACCCAGCGCGAAGTCGGCATCGATACCGACAGCTGGGAAGCCGCGCTGAAGAACACCCTGCGCCAGGCGCCGGATGTGA
TCATGATCGGCGAGGTGCGTACCCGCGAGGGCATGGACCACGCCATCGCCTTCGCTGAAACCGGTCACCTGGTGCTGTGC
ACGCTGCACGCCAACAACGCCAACCAGGCGATGGACCGCATCGTCAACTTCTTCCCGGAAGATCGCCGCAACCAGCTGTT
GATGGATCTGTCGCTGAACCTGAAGGGCGTGGTCGCGCAGCAGTTGATTCCTTCGCCGGATGGCCGTTCGCGCAAGGTGG
CGATGGAGATCCTGCTGGGCACGCCGCTGGTGCAGGACTACATCCGCGACGGCGAGATCCACAAGCTGAAGGAGCTGATG
AAGGAATCGGTCCAGCTGGGCATGAAGACCTTCGACCAGAGCCTGTTCGAGCTGTACCAGGCCGGTGAGATCAGCTACGA
GGACGCGCTGCGCTACGCCGATTCGCAGAACGAAGTGCGCCTGCGCATCAAGCTCAGCCAGGGCGGCGATGCCCGCACCC
TGTCGCAGGGGTTGGATGGCGTGGAGATTTCAGAGGTCCGGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
67.575 |
94.832 |
0.641 |
| pilU | Acinetobacter baylyi ADP1 |
64.146 |
92.248 |
0.592 |
| pilU | Vibrio cholerae strain A1552 |
53.371 |
91.99 |
0.491 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.817 |
91.731 |
0.393 |