Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KW113_RS14345 Genome accession   NZ_CP079098
Coordinates   3066130..3066648 (-) Length   172 a.a.
NCBI ID   WP_010961902.1    Uniprot ID   Q603V6
Organism   Methylococcus capsulatus strain IO1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3064238..3065325 3066130..3066648 flank 805


Gene organization within MGE regions


Location: 3064238..3066648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW113_RS14345 (KW113_14345) ssb 3066130..3066648 (-) 519 WP_010961902.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18195.01 Da        Isoelectric Point: 5.2882

>NTDB_id=587705 KW113_RS14345 WP_010961902.1 3066130..3066648(-) (ssb) [Methylococcus capsulatus strain IO1]
MASRGVNKVILIGNLGADPEVRYMPNGGAVANLRIATSESWKDQQTGQTQERTEWHSVVLYRRLAEIAGEYLKKGSKVYI
EGSLRTRKWQDKNTGQDRYATEIIGNEMQMLDRAGGGMGGGMGVGEPDWDAPPAGGGSRPRSSGGGHGGGSTGGSGAGSS
QFDEGFDDDVPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=587705 KW113_RS14345 WP_010961902.1 3066130..3066648(-) (ssb) [Methylococcus capsulatus strain IO1]
ATGGCCAGTCGAGGCGTCAACAAAGTCATACTCATCGGCAATCTGGGCGCAGATCCGGAAGTGCGTTACATGCCGAACGG
TGGCGCGGTCGCCAATCTGCGCATTGCCACTAGCGAGTCCTGGAAAGATCAACAGACCGGTCAGACCCAGGAGCGTACCG
AATGGCACAGCGTGGTGTTGTACCGCCGGCTGGCGGAAATCGCCGGCGAATATCTCAAGAAAGGCAGCAAGGTCTATATT
GAAGGCAGCCTCCGGACCCGCAAATGGCAGGACAAGAACACCGGCCAGGACCGCTATGCCACGGAAATCATCGGTAATGA
GATGCAGATGCTCGACCGTGCCGGGGGAGGGATGGGCGGCGGCATGGGCGTGGGCGAACCCGACTGGGATGCGCCGCCTG
CGGGGGGCGGCTCCCGGCCGCGCAGTTCGGGTGGCGGTCATGGCGGTGGCAGTACCGGCGGGAGCGGTGCCGGAAGCAGC
CAGTTCGACGAAGGGTTCGACGACGACGTGCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q603V6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

51.648

100

0.547
  ssb Neisseria meningitidis MC58

45.714

100

0.465
  ssb Neisseria gonorrhoeae MS11

45.143

100

0.459