Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KW114_RS06880 Genome accession   NZ_CP079097
Coordinates   1535786..1536304 (-) Length   172 a.a.
NCBI ID   WP_010961902.1    Uniprot ID   Q603V6
Organism   Methylococcus capsulatus strain KN2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1530786..1541304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW114_RS06865 (KW114_06865) - 1531144..1532337 (+) 1194 WP_218798298.1 YhcG family protein -
  KW114_RS06870 (KW114_06870) - 1532334..1533482 (+) 1149 WP_218798299.1 restriction endonuclease subunit S -
  KW114_RS06875 (KW114_06875) - 1533501..1535237 (+) 1737 WP_218798300.1 ATP-dependent endonuclease -
  KW114_RS06880 (KW114_06880) ssb 1535786..1536304 (-) 519 WP_010961902.1 single-stranded DNA-binding protein Machinery gene
  KW114_RS06885 (KW114_06885) - 1536339..1537703 (-) 1365 WP_050998151.1 MFS transporter -
  KW114_RS06890 (KW114_06890) - 1537823..1538770 (-) 948 WP_017364640.1 bestrophin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18195.01 Da        Isoelectric Point: 5.2882

>NTDB_id=587671 KW114_RS06880 WP_010961902.1 1535786..1536304(-) (ssb) [Methylococcus capsulatus strain KN2]
MASRGVNKVILIGNLGADPEVRYMPNGGAVANLRIATSESWKDQQTGQTQERTEWHSVVLYRRLAEIAGEYLKKGSKVYI
EGSLRTRKWQDKNTGQDRYATEIIGNEMQMLDRAGGGMGGGMGVGEPDWDAPPAGGGSRPRSSGGGHGGGSTGGSGAGSS
QFDEGFDDDVPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=587671 KW114_RS06880 WP_010961902.1 1535786..1536304(-) (ssb) [Methylococcus capsulatus strain KN2]
ATGGCCAGTCGAGGCGTCAACAAAGTCATACTCATCGGCAATCTGGGCGCAGATCCGGAAGTGCGTTACATGCCGAACGG
CGGCGCGGTCGCCAATCTGCGCATTGCCACTAGCGAGTCCTGGAAAGATCAGCAGACCGGTCAGACCCAGGAGCGTACCG
AATGGCACAGCGTGGTGTTGTACCGCCGGCTGGCGGAAATCGCCGGCGAATATCTCAAGAAAGGCAGCAAGGTCTATATC
GAAGGCAGCCTCCGGACCCGCAAATGGCAGGACAAGAACACCGGCCAGGACCGCTACGCCACGGAAATCATCGGTAATGA
GATGCAGATGCTCGACCGTGCCGGGGGAGGGATGGGCGGCGGCATGGGCGTGGGCGAACCCGACTGGGATGCGCCGCCTG
CGGGGGGCGGCTCCCGGCCGCGCAGTTCGGGTGGCGGTCATGGCGGTGGCAGTACCGGCGGGAGCGGTGCCGGAAGCAGC
CAGTTCGACGAAGGGTTCGACGACGACGTGCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q603V6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

51.648

100

0.547
  ssb Neisseria meningitidis MC58

45.714

100

0.465
  ssb Neisseria gonorrhoeae MS11

45.143

100

0.459