Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KW115_RS08970 Genome accession   NZ_CP079095
Coordinates   1804946..1805470 (+) Length   174 a.a.
NCBI ID   WP_218808763.1    Uniprot ID   -
Organism   Methylococcus sp. Mc7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1799946..1810470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW115_RS08960 (KW115_08960) - 1802476..1803423 (+) 948 WP_218808762.1 bestrophin family protein -
  KW115_RS08965 (KW115_08965) - 1803517..1804911 (+) 1395 WP_370630407.1 MFS transporter -
  KW115_RS08970 (KW115_08970) ssb 1804946..1805470 (+) 525 WP_218808763.1 single-stranded DNA-binding protein Machinery gene
  KW115_RS08975 (KW115_08975) - 1805501..1806712 (-) 1212 WP_218808764.1 glycosyltransferase -
  KW115_RS08980 (KW115_08980) zwf 1807173..1808654 (+) 1482 WP_255556671.1 glucose-6-phosphate dehydrogenase -
  KW115_RS08985 (KW115_08985) - 1808974..1809939 (-) 966 WP_218808765.1 hypothetical protein -
  KW115_RS08990 (KW115_08990) - 1810050..1810340 (-) 291 WP_218808766.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18351.15 Da        Isoelectric Point: 5.0100

>NTDB_id=587632 KW115_RS08970 WP_218808763.1 1804946..1805470(+) (ssb) [Methylococcus sp. Mc7]
MASRGVNKVILIGNLGADPEVRYMPNGGAVANLRIATSESWKDQQTGQLQERTEWHSVVMYRRLAEIAGEYLKKGSKVYI
EGSLRTRKWQDKNTGQDRYTTEIIGNEMQMLDRAGGGMGGGGTGAGEPDWDAPPAGGGSRPRSSGGGYGGGTGTGGSGAG
SSQFDEGFDDDVPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=587632 KW115_RS08970 WP_218808763.1 1804946..1805470(+) (ssb) [Methylococcus sp. Mc7]
ATGGCCAGTCGAGGCGTCAACAAAGTCATACTCATCGGCAACCTGGGCGCGGACCCGGAAGTGCGTTACATGCCGAACGG
CGGCGCGGTCGCCAATCTGCGCATCGCCACCAGCGAATCCTGGAAGGACCAGCAAACCGGCCAGCTCCAGGAACGCACCG
AATGGCACAGCGTGGTGATGTACCGCCGCTTGGCGGAAATCGCCGGCGAGTATCTGAAGAAAGGCAGCAAGGTCTACATC
GAAGGGAGCCTTCGGACCCGGAAGTGGCAGGACAAGAACACCGGTCAGGACCGCTACACCACCGAAATCATCGGCAATGA
AATGCAGATGCTCGACCGTGCCGGCGGGGGCATGGGTGGCGGCGGAACGGGGGCGGGCGAACCGGACTGGGATGCCCCTC
CGGCGGGCGGCGGCTCCAGGCCGCGCAGTTCGGGGGGCGGATATGGCGGCGGCACCGGCACCGGCGGGAGCGGCGCTGGA
AGCAGCCAATTCGACGAGGGGTTCGACGACGACGTGCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.846

100

0.563
  ssb Vibrio cholerae strain A1552

52.151

100

0.557
  ssb Neisseria meningitidis MC58

45.714

100

0.46
  ssb Neisseria gonorrhoeae MS11

45.143

100

0.454