Detailed information NTG0587560

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: KVH38_RS18180
• Genome accession: NZ_CP078509
• Coordinates: 3878190..3879335 (+)
• Length: 381 a.a.
• NCBI ID: WP_019405534.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain S116
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3873190..3884335

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KVH38_RS18160 (KVH38_18160)	-	3874905..3875495 (-)	591	WP_014598006.1	YggT family protein	-
KVH38_RS18165 (KVH38_18165)	proC	3875505..3876329 (-)	825	WP_053528276.1	pyrroline-5-carboxylate reductase	-
KVH38_RS18170 (KVH38_18170)	-	3876340..3877029 (-)	690	WP_053528277.1	YggS family pyridoxal phosphate-dependent enzyme	-
KVH38_RS18175 (KVH38_18175)	pilT	3877096..3878130 (+)	1035	WP_011914970.1	type IV pilus twitching motility protein PilT	Machinery gene
KVH38_RS18180 (KVH38_18180)	pilU	3878190..3879335 (+)	1146	WP_019405534.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
KVH38_RS18185 (KVH38_18185)	-	3879332..3880165 (-)	834	WP_048330155.1	TIGR03915 family putative DNA repair protein	-
KVH38_RS18190 (KVH38_18190)	-	3880165..3881379 (-)	1215	WP_014598001.1	putative DNA modification/repair radical SAM protein	-
KVH38_RS18195 (KVH38_18195)	-	3881515..3881910 (+)	396	WP_011914966.1	NINE protein	-
KVH38_RS18200 (KVH38_18200)	-	3881968..3883242 (-)	1275	WP_125855921.1	dihydroorotase	-
KVH38_RS18205 (KVH38_18205)	-	3883242..3884258 (-)	1017	WP_011914964.1	aspartate carbamoyltransferase catalytic subunit	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 42566.88 Da
• Isoelectric Point: 6.8858

>NTDB_id=587560 KVH38_RS18180 WP_019405534.1 3878190..3879335(+) (pilU) [Stutzerimonas stutzeri strain S116]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKIMPVSKTPMSPEMTRETVHGVMNEQQRREFTENHECNFAISARGIGR
FRVSAFYQRNLAGMVLRRIETNIPTIEELKLPDVLKKLSMTKRGLVLFVGATGTGKSTSLASMIGYRNKNSSGHIISIED
PIEFIHQHQNCIVTQREVGIDTSSFEVALKNTLRQAPDVILIGEIRTRETMDYAVAFAETGHLCLATLHANNANQALDRI
INFFPPDRHNQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLAADLIRKGEVHELKSLMKRSTELGMQTFDQA
LYNLYVQGEITYEDALLHADSANDLRLLIKLGSETDGEHLTSVSQGLSLEVSDEDPGRRFR

Nucleotide

• Length: 1146 bp

>NTDB_id=587560 KVH38_RS18180 WP_019405534.1 3878190..3879335(+) (pilU) [Stutzerimonas stutzeri strain S116]
ATGGAATTCGAGAAACTTCTGCGCCTGATGGTCGAAAAAGGCGGCTCCGATCTGTTCATCACGGCTGGCGTGCCGCCATC
GATGAAGGTCAACGGCAAGATCATGCCGGTGAGCAAGACGCCCATGTCGCCGGAGATGACCCGGGAAACCGTGCACGGCG
TGATGAACGAGCAGCAGCGCCGCGAGTTCACCGAGAACCACGAATGCAACTTCGCCATCAGCGCCCGCGGCATCGGCCGC
TTCCGTGTCAGCGCGTTCTATCAGCGAAACCTGGCCGGCATGGTGCTGCGTCGCATCGAGACCAACATCCCGACCATCGA
AGAACTCAAGCTGCCGGACGTCCTGAAGAAGCTGTCGATGACCAAACGTGGTCTGGTGCTGTTCGTCGGCGCCACCGGTA
CCGGCAAGTCGACGTCGCTGGCCTCGATGATCGGCTACCGCAACAAGAACTCCAGCGGGCACATCATCTCCATTGAAGAC
CCGATCGAATTCATCCACCAGCACCAGAATTGCATCGTCACCCAGCGCGAAGTGGGCATCGACACCAGCTCCTTCGAGGT
GGCCCTGAAGAACACCCTGCGCCAGGCGCCTGACGTGATCCTCATCGGCGAGATCCGTACCCGCGAAACCATGGATTACG
CGGTCGCCTTCGCCGAAACCGGCCACCTGTGCCTGGCCACGCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCGCCGGACCGGCACAACCAGGTCTGGATGGACCTGTCGCTCAACCTCAAGGCCATCGTCGCCCAGCA
GCTGGTTCCGACCCCGGACGGCAAGGGTCGTCGTGCGGTGATCGAGGTGCTGATCAATACGCCGCTGGCGGCCGACCTGA
TCCGCAAGGGCGAGGTGCACGAGCTGAAATCGCTGATGAAGCGCTCCACCGAGCTGGGTATGCAGACCTTCGACCAGGCG
CTGTACAACCTCTACGTGCAGGGGGAGATCACCTACGAAGATGCCCTGCTGCATGCTGACTCGGCCAACGACCTGCGACT
GCTGATCAAGCTGGGTTCGGAAACCGACGGTGAGCACCTGACCAGCGTATCCCAGGGCCTGAGCCTGGAGGTCAGCGACG
AGGACCCGGGCCGGCGCTTCCGTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	95.013	100	0.95
pilU	Acinetobacter baylyi ADP1	66.106	93.701	0.619
pilU	Vibrio cholerae strain A1552	59.429	91.864	0.546
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.953	88.976	0.391