Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KVH38_RS13125 Genome accession   NZ_CP078509
Coordinates   2789214..2789705 (-) Length   163 a.a.
NCBI ID   WP_003281797.1    Uniprot ID   A0A210XTT8
Organism   Stutzerimonas stutzeri strain S116     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2784214..2794705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVH38_RS13100 (KVH38_13100) - 2784327..2785673 (-) 1347 WP_108241454.1 MotA/TolQ/ExbB proton channel family protein -
  KVH38_RS13105 (KVH38_13105) - 2785670..2786455 (-) 786 WP_013981723.1 DUF3450 domain-containing protein -
  KVH38_RS13110 (KVH38_13110) - 2786640..2787326 (+) 687 WP_014595784.1 OmpW/AlkL family protein -
  KVH38_RS13115 (KVH38_13115) - 2787397..2788326 (-) 930 WP_125873042.1 NAD-dependent epimerase/dehydratase family protein -
  KVH38_RS13120 (KVH38_13120) - 2788319..2789203 (-) 885 WP_017244908.1 sugar nucleotide-binding protein -
  KVH38_RS13125 (KVH38_13125) ssb 2789214..2789705 (-) 492 WP_003281797.1 single-stranded DNA-binding protein Machinery gene
  KVH38_RS13130 (KVH38_13130) - 2789877..2791244 (-) 1368 WP_125856738.1 MFS transporter -
  KVH38_RS13135 (KVH38_13135) uvrA 2791376..2794213 (+) 2838 WP_013981718.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18314.38 Da        Isoelectric Point: 5.9492

>NTDB_id=587549 KVH38_RS13125 WP_003281797.1 2789214..2789705(-) (ssb) [Stutzerimonas stutzeri strain S116]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=587549 KVH38_RS13125 WP_003281797.1 2789214..2789705(-) (ssb) [Stutzerimonas stutzeri strain S116]
ATGGCCAGAGGGGTGAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCTTCAGGAGCGCACCGAGT
GGCACCGTGTGGTGCTCTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCCGCCTGCAGACTCGCGAGTGGGAAAAGGATGGCGTCAAGCGCTACACCACCGAAATCGTCGTCGACATGAATGGCAC
CATGCAGCTGCTCGGCGGCCGTGGCGGCAGTTCCGATGACGCGCCACGTCAGCCGCGCCCGCAGCGCGAGCCGCAACAGG
CTCCGCGTCAGCAGGCTCAGCCGCAGCAGCCGGCCGCACGGCAGCAGCCAGCGCCGGACTATGACAGCTTCGATGACGAC
ATCCCCTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A210XTT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.571

100

0.607
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.515
  ssb Glaesserella parasuis strain SC1401

45.355

100

0.509
  ssb Neisseria meningitidis MC58

46.591

100

0.503