Detailed information NTG0058750

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: K751_RS07080
• Genome accession: NC_021218
• Coordinates: 1472719..1473681 (-)
• Length: 320 a.a.
• NCBI ID: WP_015642325.1
• Uniprot ID: -
• Organism: Helicobacter pylori UM066
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1467719..1478681

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K751_RS08665	-	1467789..1467914 (+)	126	WP_021299789.1	hypothetical protein	-
K751_RS07060 (K751_00895)	-	1468024..1468956 (-)	933	WP_001002433.1	GDP-L-fucose synthase	-
K751_RS07065 (K751_00890)	gmd	1468949..1470094 (-)	1146	WP_015642328.1	GDP-mannose 4,6-dehydratase	-
K751_RS07070 (K751_00885)	-	1470108..1471520 (-)	1413	WP_015642327.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
K751_RS07075 (K751_00880)	comB10	1471590..1472726 (-)	1137	WP_015642326.1	DNA type IV secretion system protein ComB10	Machinery gene
K751_RS07080 (K751_00875)	comB9	1472719..1473681 (-)	963	WP_015642325.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
K751_RS07085 (K751_00870)	comB8	1473681..1474424 (-)	744	WP_000660524.1	virB8 family protein	Machinery gene
K751_RS07090 (K751_08960)	comB7	1474421..1474546 (-)	126	WP_001217865.1	hypothetical protein	Machinery gene
K751_RS07095 (K751_00865)	comB6	1474562..1475617 (-)	1056	WP_015642324.1	P-type conjugative transfer protein TrbL	Machinery gene
K751_RS07100 (K751_00860)	-	1475625..1476620 (-)	996	WP_015642323.1	PDZ domain-containing protein	-
K751_RS07105 (K751_00855)	-	1476620..1476913 (-)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
K751_RS07110 (K751_00850)	panD	1476924..1477274 (-)	351	WP_000142213.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36847.40 Da
• Isoelectric Point: 9.4585

>NTDB_id=58750 K751_RS07080 WP_015642325.1 1472719..1473681(-) (comB9) [Helicobacter pylori UM066]
MRKVLYALVGFLLAFSTLKADDFLEEANETAPTNLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENILEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRSGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=58750 K751_RS07080 WP_015642325.1 1472719..1473681(-) (comB9) [Helicobacter pylori UM066]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCACTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCCACGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGTATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATATCCTTGAAAAGGCTCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATCTGTTCTAAAAAATCCAAA
CTTTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACCTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGACTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATCGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.025	100	0.938