Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   K751_RS07075 Genome accession   NC_021218
Coordinates   1471590..1472726 (-) Length   378 a.a.
NCBI ID   WP_015642326.1    Uniprot ID   -
Organism   Helicobacter pylori UM066     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1466590..1477726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K751_RS07055 (K751_00900) hypE 1466747..1467745 (+) 999 WP_015642329.1 hydrogenase expression/formation protein HypE -
  K751_RS08665 - 1467789..1467914 (+) 126 WP_021299789.1 hypothetical protein -
  K751_RS07060 (K751_00895) - 1468024..1468956 (-) 933 WP_001002433.1 GDP-L-fucose synthase -
  K751_RS07065 (K751_00890) gmd 1468949..1470094 (-) 1146 WP_015642328.1 GDP-mannose 4,6-dehydratase -
  K751_RS07070 (K751_00885) - 1470108..1471520 (-) 1413 WP_015642327.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  K751_RS07075 (K751_00880) comB10 1471590..1472726 (-) 1137 WP_015642326.1 DNA type IV secretion system protein ComB10 Machinery gene
  K751_RS07080 (K751_00875) comB9 1472719..1473681 (-) 963 WP_015642325.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  K751_RS07085 (K751_00870) comB8 1473681..1474424 (-) 744 WP_000660524.1 virB8 family protein Machinery gene
  K751_RS07090 (K751_08960) comB7 1474421..1474546 (-) 126 WP_001217865.1 hypothetical protein Machinery gene
  K751_RS07095 (K751_00865) comB6 1474562..1475617 (-) 1056 WP_015642324.1 P-type conjugative transfer protein TrbL Machinery gene
  K751_RS07100 (K751_00860) - 1475625..1476620 (-) 996 WP_015642323.1 PDZ domain-containing protein -
  K751_RS07105 (K751_00855) - 1476620..1476913 (-) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  K751_RS07110 (K751_00850) panD 1476924..1477274 (-) 351 WP_000142213.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42069.64 Da        Isoelectric Point: 9.9312

>NTDB_id=58749 K751_RS07075 WP_015642326.1 1471590..1472726(-) (comB10) [Helicobacter pylori UM066]
MNKWLKGALVFAGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPTFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=58749 K751_RS07075 WP_015642326.1 1471590..1472726(-) (comB10) [Helicobacter pylori UM066]
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGCAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCACCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTATTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTTTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGCAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

96.296

100

0.963

Multiple sequence alignment