Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   K751_RS07085 Genome accession   NC_021218
Coordinates   1473681..1474424 (-) Length   247 a.a.
NCBI ID   WP_000660524.1    Uniprot ID   A0AAI8F143
Organism   Helicobacter pylori UM066     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1468681..1479424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K751_RS07065 (K751_00890) gmd 1468949..1470094 (-) 1146 WP_015642328.1 GDP-mannose 4,6-dehydratase -
  K751_RS07070 (K751_00885) - 1470108..1471520 (-) 1413 WP_015642327.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  K751_RS07075 (K751_00880) comB10 1471590..1472726 (-) 1137 WP_015642326.1 DNA type IV secretion system protein ComB10 Machinery gene
  K751_RS07080 (K751_00875) comB9 1472719..1473681 (-) 963 WP_015642325.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  K751_RS07085 (K751_00870) comB8 1473681..1474424 (-) 744 WP_000660524.1 virB8 family protein Machinery gene
  K751_RS07090 (K751_08960) comB7 1474421..1474546 (-) 126 WP_001217865.1 hypothetical protein Machinery gene
  K751_RS07095 (K751_00865) comB6 1474562..1475617 (-) 1056 WP_015642324.1 P-type conjugative transfer protein TrbL Machinery gene
  K751_RS07100 (K751_00860) - 1475625..1476620 (-) 996 WP_015642323.1 PDZ domain-containing protein -
  K751_RS07105 (K751_00855) - 1476620..1476913 (-) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  K751_RS07110 (K751_00850) panD 1476924..1477274 (-) 351 WP_000142213.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28684.91 Da        Isoelectric Point: 8.9546

>NTDB_id=58751 K751_RS07085 WP_000660524.1 1473681..1474424(-) (comB8) [Helicobacter pylori UM066]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=58751 K751_RS07085 WP_000660524.1 1473681..1474424(-) (comB8) [Helicobacter pylori UM066]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCTATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAACCGCATTGATGATAAATCGCGCT
ATGAATTGGTGCGTTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAATGAAAACAAGCTAGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972

Multiple sequence alignment