Detailed information NTG0058753

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: K751_RS07095
• Genome accession: NC_021218
• Coordinates: 1474562..1475617 (-)
• Length: 351 a.a.
• NCBI ID: WP_015642324.1
• Uniprot ID: -
• Organism: Helicobacter pylori UM066
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1469562..1480617

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K751_RS07070 (K751_00885)	-	1470108..1471520 (-)	1413	WP_015642327.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
K751_RS07075 (K751_00880)	comB10	1471590..1472726 (-)	1137	WP_015642326.1	DNA type IV secretion system protein ComB10	Machinery gene
K751_RS07080 (K751_00875)	comB9	1472719..1473681 (-)	963	WP_015642325.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
K751_RS07085 (K751_00870)	comB8	1473681..1474424 (-)	744	WP_000660524.1	virB8 family protein	Machinery gene
K751_RS07090 (K751_08960)	comB7	1474421..1474546 (-)	126	WP_001217865.1	hypothetical protein	Machinery gene
K751_RS07095 (K751_00865)	comB6	1474562..1475617 (-)	1056	WP_015642324.1	P-type conjugative transfer protein TrbL	Machinery gene
K751_RS07100 (K751_00860)	-	1475625..1476620 (-)	996	WP_015642323.1	PDZ domain-containing protein	-
K751_RS07105 (K751_00855)	-	1476620..1476913 (-)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
K751_RS07110 (K751_00850)	panD	1476924..1477274 (-)	351	WP_000142213.1	aspartate 1-decarboxylase	-
K751_RS07115 (K751_00845)	-	1477264..1479486 (-)	2223	WP_015642322.1	ATP-dependent Clp protease ATP-binding subunit	-
K751_RS07120 (K751_00840)	-	1479486..1479761 (-)	276	WP_000784908.1	ATP-dependent Clp protease adaptor ClpS	-
K751_RS07125 (K751_00835)	-	1479784..1480197 (-)	414	WP_015642321.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39831.83 Da
• Isoelectric Point: 8.8165

>NTDB_id=58753 K751_RS07095 WP_015642324.1 1474562..1475617(-) (comB6) [Helicobacter pylori UM066]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKEAYKLATNLSANLSQNALNSLQYITIPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=58753 K751_RS07095 WP_015642324.1 1474562..1475617(-) (comB6) [Helicobacter pylori UM066]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCACGCAAAGCCT
CTCTCAAAGCTTGAGCAATTTTTCTAACCATGCGCTTTCTTTAGATTTCATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGATCTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATTAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAGCTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGATACCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963