Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KWY94_RS05930 Genome accession   NZ_CP078113
Coordinates   1119071..1119595 (+) Length   174 a.a.
NCBI ID   WP_003688219.1    Uniprot ID   A0AA44ZGB4
Organism   Neisseria gonorrhoeae strain O2D156     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1114071..1124595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY94_RS05905 (KWY94_05905) - 1114457..1115293 (+) 837 WP_218461158.1 opacity family porin -
  KWY94_RS05910 (KWY94_05910) - 1115655..1116145 (+) 491 Protein_1137 transposase -
  KWY94_RS05915 (KWY94_05915) - 1116182..1116448 (+) 267 Protein_1138 transposase -
  KWY94_RS05920 (KWY94_05920) - 1116950..1117573 (+) 624 WP_003688215.1 lytic transglycosylase domain-containing protein -
  KWY94_RS05925 (KWY94_05925) - 1117685..1119067 (+) 1383 WP_003688217.1 MFS transporter -
  KWY94_RS05930 (KWY94_05930) ssb 1119071..1119595 (+) 525 WP_003688219.1 single-stranded DNA-binding protein Machinery gene
  KWY94_RS05935 (KWY94_05935) - 1119968..1120891 (+) 924 WP_003699810.1 DMT family transporter -
  KWY94_RS05940 (KWY94_05940) fumC 1120956..1122344 (-) 1389 WP_003691001.1 class II fumarate hydratase -
  KWY94_RS05945 (KWY94_05945) tkt 1122488..1124467 (-) 1980 WP_003688227.1 transketolase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19475.68 Da        Isoelectric Point: 5.8313

>NTDB_id=586847 KWY94_RS05930 WP_003688219.1 1119071..1119595(+) (ssb) [Neisseria gonorrhoeae strain O2D156]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYDEGYGQNQEAYQRPAQQSRQPAPDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=586847 KWY94_RS05930 WP_003688219.1 1119071..1119595(+) (ssb) [Neisseria gonorrhoeae strain O2D156]
ATGTCATTGAACAAAGTCATCCTTATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCAGT
GTGTAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAGCGCGTAGAGCGCACCGAATGGCACAACA
TCACGATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATCTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGCACCGCTTACGATATTGTCGCCAATGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGCGCGCCTTACGATGAAGGTTACGGTCAGAATCAGGAGGCTTACCAACGCCCCGCTC
AGCAAAGCCGGCAGCCCGCTCCCGACGCGCCGTCCCATCCCCAAGAAGCACCCGCCGCGCCGCGCCGCCAACCCGTGCCG
GCCGCCGCCCCGGTCGAGGACATTGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

99.425

100

0.994
  ssb Neisseria meningitidis MC58

98.276

100

0.983
  ssb Vibrio cholerae strain A1552

47.486

100

0.489
  ssb Glaesserella parasuis strain SC1401

43.889

100

0.454