Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KVF90_RS16745 Genome accession   NZ_CP078091
Coordinates   3493082..3493621 (-) Length   179 a.a.
NCBI ID   WP_264392686.1    Uniprot ID   -
Organism   Porphyrobacter sp. ULC335     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3488082..3498621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVF90_RS16710 (KVF90_16605) - 3488657..3489760 (-) 1104 WP_264392680.1 acyltransferase family protein -
  KVF90_RS16715 (KVF90_16610) hslV 3489813..3490370 (-) 558 WP_264392681.1 ATP-dependent protease subunit HslV -
  KVF90_RS16720 (KVF90_16615) - 3490426..3490941 (-) 516 WP_413676995.1 outer membrane protein assembly factor BamE -
  KVF90_RS16725 (KVF90_16620) - 3491182..3491709 (+) 528 WP_264392682.1 ubiquinol-cytochrome C chaperone family protein -
  KVF90_RS16730 (KVF90_16625) - 3491706..3492239 (+) 534 WP_264392683.1 YceD family protein -
  KVF90_RS16735 (KVF90_16630) - 3492310..3492546 (-) 237 WP_264392684.1 helix-turn-helix transcriptional regulator -
  KVF90_RS16740 (KVF90_16635) - 3492543..3492941 (-) 399 WP_264392685.1 hypothetical protein -
  KVF90_RS16745 (KVF90_16640) ssb 3493082..3493621 (-) 540 WP_264392686.1 single-stranded DNA-binding protein Machinery gene
  KVF90_RS16750 (KVF90_16645) - 3493786..3494448 (-) 663 WP_264392687.1 COQ9 family protein -
  KVF90_RS16755 (KVF90_16650) - 3494450..3495091 (-) 642 WP_264392688.1 ankyrin repeat domain-containing protein -
  KVF90_RS16760 (KVF90_16655) - 3495186..3495791 (+) 606 WP_264392689.1 SCO family protein -
  KVF90_RS16765 (KVF90_16660) - 3495779..3496249 (+) 471 WP_264392690.1 YcgN family cysteine cluster protein -
  KVF90_RS16770 (KVF90_16665) - 3496246..3496980 (+) 735 WP_264392691.1 M48 family metallopeptidase -
  KVF90_RS16775 (KVF90_16670) - 3497024..3497476 (+) 453 WP_264392692.1 hypothetical protein -
  KVF90_RS16780 (KVF90_16675) ribD 3497509..3498465 (+) 957 WP_264392693.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18072.89 Da        Isoelectric Point: 5.2615

>NTDB_id=586672 KVF90_RS16745 WP_264392686.1 3493082..3493621(-) (ssb) [Porphyrobacter sp. ULC335]
MAGSLNKVMLIGNLGADPEIRSFQNGGKVANLRIATSEQWKDKATGERKEKTEWHTVAIFSEGLVSVVERFLKKGSKVFV
EGKLQTRKWQDQNGQDRYSTEIVIQGLGGTLTMLDGPQGSGGAGGGMGGGGGRSGGFSGGGGGGSWDQGGGGSSGGGFGG
GGAPAGGGGYDDLDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=586672 KVF90_RS16745 WP_264392686.1 3493082..3493621(-) (ssb) [Porphyrobacter sp. ULC335]
ATGGCGGGTTCGCTCAACAAGGTCATGCTGATTGGCAATCTGGGCGCTGATCCGGAAATCCGCAGCTTCCAGAATGGCGG
CAAGGTCGCCAACCTGCGCATCGCCACGTCCGAACAGTGGAAGGACAAGGCGACCGGGGAGCGCAAGGAAAAGACCGAGT
GGCACACGGTCGCGATCTTCTCCGAAGGCCTCGTCAGCGTGGTCGAACGCTTCCTGAAGAAGGGCAGCAAGGTCTTCGTG
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGACCAGAACGGGCAGGACCGCTACAGCACCGAAATCGTCATCCAGGGCCT
CGGCGGCACGCTTACCATGCTTGATGGTCCGCAAGGCAGCGGCGGTGCAGGCGGCGGCATGGGCGGCGGCGGCGGTCGCT
CCGGCGGCTTCAGCGGCGGCGGTGGCGGTGGTAGCTGGGATCAGGGCGGTGGCGGTTCGTCGGGCGGCGGCTTCGGCGGC
GGCGGCGCGCCTGCGGGCGGCGGCGGCTACGACGATCTGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.09

100

0.497
  ssb Vibrio cholerae strain A1552

49.171

100

0.497
  ssb Neisseria meningitidis MC58

36.757

100

0.38
  ssb Neisseria gonorrhoeae MS11

36.413

100

0.374