Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KUD99_RS03680 Genome accession   NZ_CP078087
Coordinates   809340..809831 (+) Length   163 a.a.
NCBI ID   WP_003281797.1    Uniprot ID   A0A210XTT8
Organism   Stutzerimonas stutzeri strain YWX-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 804340..814831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUD99_RS03670 uvrA 804832..807669 (-) 2838 WP_013981718.1 excinuclease ABC subunit UvrA -
  KUD99_RS03675 - 807801..809168 (+) 1368 WP_017244909.1 MFS transporter -
  KUD99_RS03680 ssb 809340..809831 (+) 492 WP_003281797.1 single-stranded DNA-binding protein Machinery gene
  KUD99_RS03685 - 809842..810726 (+) 885 WP_017244908.1 sugar nucleotide-binding protein -
  KUD99_RS03690 - 810719..811648 (+) 930 WP_053528044.1 NAD-dependent epimerase/dehydratase family protein -
  KUD99_RS03695 - 811719..812417 (-) 699 WP_218422225.1 OmpW/AlkL family protein -
  KUD99_RS03700 - 812601..813386 (+) 786 WP_218422226.1 DUF3450 domain-containing protein -
  KUD99_RS03705 - 813383..814729 (+) 1347 WP_218422227.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18314.38 Da        Isoelectric Point: 5.9492

>NTDB_id=586634 KUD99_RS03680 WP_003281797.1 809340..809831(+) (ssb) [Stutzerimonas stutzeri strain YWX-1]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=586634 KUD99_RS03680 WP_003281797.1 809340..809831(+) (ssb) [Stutzerimonas stutzeri strain YWX-1]
ATGGCCAGAGGGGTGAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCTTCAGGAGCGCACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGTCGCCTGCAGACTCGCGAGTGGGAAAAGGATGGCGTCAAGCGCTACACCACCGAAATCGTCGTCGACATGAATGGCAC
CATGCAGCTGCTCGGCGGCCGTGGCGGCAGTTCCGATGACGCGCCACGTCAGCCGCGCCCGCAGCGCGAGCCGCAACAGG
CTCCGCGTCAGCAGGCTCAGCCGCAGCAGCCGGCCGCACGGCAGCAGCCAGCGCCGGACTATGACAGCTTCGATGACGAC
ATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A210XTT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.571

100

0.607
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.515
  ssb Glaesserella parasuis strain SC1401

45.355

100

0.509
  ssb Neisseria meningitidis MC58

46.591

100

0.503