Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KU891_RS26385 Genome accession   NZ_CP078081
Coordinates   5128525..5129046 (-) Length   173 a.a.
NCBI ID   WP_000981967.1    Uniprot ID   A0A063CSK8
Organism   Bacillus tropicus strain EMB20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5123525..5134046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU891_RS26365 (KU891_26295) rplI 5124735..5125181 (-) 447 WP_000864230.1 50S ribosomal protein L9 -
  KU891_RS26370 (KU891_26300) - 5125178..5127151 (-) 1974 WP_001113894.1 DHH family phosphoesterase -
  KU891_RS26375 (KU891_26305) - 5127230..5128165 (-) 936 WP_061402249.1 YybS family protein -
  KU891_RS26380 (KU891_26310) rpsR 5128246..5128479 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  KU891_RS26385 (KU891_26315) ssbA 5128525..5129046 (-) 522 WP_000981967.1 single-stranded DNA-binding protein Machinery gene
  KU891_RS26390 (KU891_26320) rpsF 5129073..5129363 (-) 291 WP_001233780.1 30S ribosomal protein S6 -
  KU891_RS26395 (KU891_26325) ychF 5129555..5130655 (-) 1101 WP_000524669.1 redox-regulated ATPase YchF -
  KU891_RS26400 (KU891_26330) - 5130771..5130968 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  KU891_RS26405 (KU891_26335) - 5130989..5131870 (-) 882 WP_000365105.1 mechanosensitive ion channel family protein -
  KU891_RS26410 (KU891_26340) yyaC 5132129..5132725 (+) 597 WP_001020718.1 spore protease YyaC -
  KU891_RS26415 (KU891_26345) spo0J 5132746..5133597 (-) 852 WP_001051839.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18823.61 Da        Isoelectric Point: 4.9327

>NTDB_id=586627 KU891_RS26385 WP_000981967.1 5128525..5129046(-) (ssbA) [Bacillus tropicus strain EMB20]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=586627 KU891_RS26385 WP_000981967.1 5128525..5129046(-) (ssbA) [Bacillus tropicus strain EMB20]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCGAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGGCGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACCAAGGTAACCAAGGAAACTCTGGATTTACAAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCTGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063CSK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.316

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.272

0.399
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382