Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KUD94_RS11705 Genome accession   NZ_CP078069
Coordinates   2435177..2435716 (-) Length   179 a.a.
NCBI ID   WP_218237378.1    Uniprot ID   -
Organism   Comamonas sp. NLF-1-9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2430177..2440716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUD94_RS11680 (KUD94_11680) - 2430422..2431639 (+) 1218 WP_218237373.1 MFS transporter -
  KUD94_RS11685 (KUD94_11685) - 2432104..2433042 (+) 939 WP_218237374.1 endonuclease/exonuclease/phosphatase family protein -
  KUD94_RS11690 (KUD94_11690) - 2433103..2433576 (+) 474 WP_218237375.1 peptidylprolyl isomerase -
  KUD94_RS11695 (KUD94_11695) - 2433641..2434510 (-) 870 WP_218237376.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  KUD94_RS11700 (KUD94_11700) - 2434696..2435046 (+) 351 WP_218237377.1 HPF/RaiA family ribosome-associated protein -
  KUD94_RS11705 (KUD94_11705) ssb 2435177..2435716 (-) 540 WP_218237378.1 single-stranded DNA-binding protein Machinery gene
  KUD94_RS11710 (KUD94_11710) - 2435857..2437038 (-) 1182 WP_218239284.1 MFS transporter -
  KUD94_RS11715 (KUD94_11715) corA 2437422..2438483 (+) 1062 WP_218237379.1 magnesium/cobalt transporter CorA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19318.43 Da        Isoelectric Point: 5.8073

>NTDB_id=586550 KUD94_RS11705 WP_218237378.1 2435177..2435716(-) (ssb) [Comamonas sp. NLF-1-9]
MASVNKVILVGNLGRDPETRTFPSGDQVTNVTLATTNKWRDKQTGEAREHTEWHRLVFNGKLAEIAAQYLRKGSQIYVEG
SIRTRKWQAQDGQERYSTEIRVDVMQMLGSRPGQGGGSGGYGDDEGFGDASGFDAPARRPAAGAGARPAPMQRPAPAPMA
APQPPAASGFDDMEDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=586550 KUD94_RS11705 WP_218237378.1 2435177..2435716(-) (ssb) [Comamonas sp. NLF-1-9]
ATGGCATCGGTCAACAAAGTCATCCTCGTCGGCAACCTCGGGCGCGACCCGGAGACGCGCACCTTCCCCAGCGGCGACCA
GGTCACCAACGTCACCCTGGCCACGACCAACAAGTGGCGCGACAAGCAGACCGGCGAGGCGCGCGAGCACACCGAATGGC
ACCGCCTGGTGTTCAACGGCAAGCTGGCCGAGATCGCCGCCCAATACCTGCGCAAGGGCAGCCAGATCTATGTGGAAGGC
AGCATACGCACGCGCAAGTGGCAGGCCCAGGACGGGCAGGAGCGCTACAGCACGGAAATCCGCGTCGACGTGATGCAGAT
GCTGGGCAGCCGCCCCGGCCAGGGCGGGGGCTCGGGCGGCTACGGCGACGACGAAGGCTTTGGCGATGCCAGCGGCTTTG
ATGCACCGGCGCGCCGCCCGGCCGCCGGCGCTGGCGCGCGGCCCGCGCCCATGCAGCGCCCGGCGCCCGCGCCGATGGCC
GCGCCCCAGCCCCCCGCCGCCTCGGGCTTTGACGACATGGAAGACGACATCCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.042

100

0.547
  ssb Glaesserella parasuis strain SC1401

49.738

100

0.531
  ssb Neisseria gonorrhoeae MS11

45.856

100

0.464
  ssb Neisseria meningitidis MC58

45.304

100

0.458