Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EGT68_RS01020 Genome accession   NZ_CP078042
Coordinates   219283..219867 (+) Length   194 a.a.
NCBI ID   WP_004909838.1    Uniprot ID   A0A8I0V5Q1
Organism   Acinetobacter junii strain AJ_068     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 214283..224867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT68_RS01000 (EGT68_001000) tenA 214517..215191 (-) 675 WP_125272668.1 thiaminase II -
  EGT68_RS01005 (EGT68_001005) - 215366..216448 (+) 1083 WP_039047999.1 DUF475 domain-containing protein -
  EGT68_RS01010 (EGT68_001010) - 216517..217671 (-) 1155 WP_151825979.1 IS4 family transposase -
  EGT68_RS01015 (EGT68_001015) - 217866..219230 (+) 1365 WP_005403380.1 MFS transporter -
  EGT68_RS01020 (EGT68_001020) ssb 219283..219867 (+) 585 WP_004909838.1 single-stranded DNA-binding protein Machinery gene
  EGT68_RS01025 (EGT68_001025) - 220375..221817 (+) 1443 WP_125272741.1 amino acid permease -
  EGT68_RS01030 (EGT68_001030) - 221890..223389 (-) 1500 WP_125272740.1 PLP-dependent aminotransferase family protein -
  EGT68_RS01035 (EGT68_001035) gabT 223544..224836 (+) 1293 WP_004951385.1 4-aminobutyrate--2-oxoglutarate transaminase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21241.96 Da        Isoelectric Point: 6.7308

>NTDB_id=586455 EGT68_RS01020 WP_004909838.1 219283..219867(+) (ssb) [Acinetobacter junii strain AJ_068]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQGGEHQAGNDFNQPRFNNNQGGGYQNTGYNNNQNGYGQGGGFGGGNQG
NYAGSPQAGNGFNTPKAAPQPAAAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=586455 EGT68_RS01020 WP_004909838.1 219283..219867(+) (ssb) [Acinetobacter junii strain AJ_068]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCTGAGACAAAAACCTTTCCAAATGGTGGATC
ACTGACCCAATTTTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGAAAAGAACAAACAGAATGGC
ATCGTATCGTATTGCATAACCGTCTAGGTGAAATTGCACAGCAATACTTACGTAAAGGTTCGAAAGTTTATATCGAAGGT
TCATTGCGTACGCGCCAATGGACAGACCAAAATGGTCAAGAGCGTTACAGCACCGAAATTCGTGGTGACCAAATGCAAAT
GCTCGATTCTCGTCAGCAAGGTGGTGAGCATCAAGCGGGTAATGATTTTAACCAACCGCGTTTTAACAACAATCAAGGCG
GTGGCTACCAAAACACAGGCTATAACAACAACCAAAATGGTTATGGTCAAGGTGGCGGTTTTGGTGGTGGAAATCAGGGC
AATTATGCAGGCAGTCCGCAAGCAGGTAATGGTTTTAATACACCAAAAGCCGCACCTCAACCTGCTGCGGCTCCAGCTGA
TTTAGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.67

100

0.454
  ssb Neisseria gonorrhoeae MS11

39.583

98.969

0.392
  ssb Neisseria meningitidis MC58

39.583

98.969

0.392