Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EGK58_RS14605 | Genome accession | NZ_CP078027 |
| Coordinates | 3066165..3066749 (-) | Length | 194 a.a. |
| NCBI ID | WP_004781559.1 | Uniprot ID | N8VKE0 |
| Organism | Acinetobacter variabilis strain AV_175 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3018309..3070622 | 3066165..3066749 | within | 0 |
Gene organization within MGE regions
Location: 3018309..3070622
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGK58_RS14385 (EGK58_014385) | - | 3018309..3019598 (+) | 1290 | WP_125278579.1 | tyrosine-type recombinase/integrase | - |
| EGK58_RS14390 (EGK58_014390) | - | 3019631..3020671 (+) | 1041 | WP_125278580.1 | hypothetical protein | - |
| EGK58_RS14395 (EGK58_014395) | - | 3020797..3021084 (+) | 288 | WP_125278581.1 | helix-turn-helix transcriptional regulator | - |
| EGK58_RS14400 (EGK58_014400) | - | 3021087..3021782 (+) | 696 | WP_125278582.1 | phage antirepressor KilAC domain-containing protein | - |
| EGK58_RS14405 (EGK58_014405) | - | 3021779..3022093 (+) | 315 | Protein_2799 | hypothetical protein | - |
| EGK58_RS14410 (EGK58_014410) | - | 3022090..3022656 (+) | 567 | WP_125278584.1 | hypothetical protein | - |
| EGK58_RS14415 (EGK58_014415) | - | 3022649..3022825 (+) | 177 | WP_171431232.1 | hypothetical protein | - |
| EGK58_RS14420 (EGK58_014420) | - | 3022815..3023609 (+) | 795 | WP_125278585.1 | helix-turn-helix domain-containing protein | - |
| EGK58_RS14425 (EGK58_014425) | dnaB | 3023606..3024973 (+) | 1368 | WP_125278586.1 | replicative DNA helicase | - |
| EGK58_RS14430 (EGK58_014430) | - | 3024970..3025344 (+) | 375 | WP_034589936.1 | hypothetical protein | - |
| EGK58_RS14435 (EGK58_014435) | - | 3025408..3026082 (-) | 675 | WP_125278587.1 | hypothetical protein | - |
| EGK58_RS14440 (EGK58_014440) | - | 3026373..3026987 (+) | 615 | WP_125278588.1 | hypothetical protein | - |
| EGK58_RS14445 (EGK58_014445) | - | 3026965..3028044 (+) | 1080 | WP_213071243.1 | helix-turn-helix domain-containing protein | - |
| EGK58_RS14455 (EGK58_014455) | - | 3030134..3031330 (+) | 1197 | WP_125278590.1 | tyrosine-type recombinase/integrase | - |
| EGK58_RS14460 (EGK58_014460) | - | 3031439..3032032 (+) | 594 | WP_125278591.1 | hypothetical protein | - |
| EGK58_RS14465 (EGK58_014465) | - | 3032082..3033971 (-) | 1890 | WP_125278592.1 | GmrSD restriction endonuclease domain-containing protein | - |
| EGK58_RS14470 (EGK58_014470) | - | 3034044..3037466 (-) | 3423 | WP_125278593.1 | DEAD/DEAH box helicase family protein | - |
| EGK58_RS14475 (EGK58_014475) | - | 3037473..3040643 (-) | 3171 | WP_125278594.1 | site-specific DNA-methyltransferase | - |
| EGK58_RS14480 (EGK58_014480) | - | 3040836..3042965 (+) | 2130 | WP_125278595.1 | nuclease-related domain-containing DEAD/DEAH box helicase | - |
| EGK58_RS14485 (EGK58_014485) | - | 3043024..3043296 (-) | 273 | WP_125278605.1 | hypothetical protein | - |
| EGK58_RS14490 (EGK58_014490) | - | 3043339..3046176 (-) | 2838 | WP_125278596.1 | SNF2-related protein | - |
| EGK58_RS14495 (EGK58_014495) | - | 3046272..3047318 (-) | 1047 | WP_125278597.1 | HNH endonuclease | - |
| EGK58_RS14500 (EGK58_014500) | - | 3047322..3047912 (-) | 591 | WP_125278598.1 | class I SAM-dependent methyltransferase | - |
| EGK58_RS14505 (EGK58_014505) | - | 3047987..3048217 (-) | 231 | WP_004884796.1 | helix-turn-helix transcriptional regulator | - |
| EGK58_RS14510 (EGK58_014510) | - | 3048297..3049181 (-) | 885 | WP_125278599.1 | hydrolase or metal-binding protein | - |
| EGK58_RS14515 (EGK58_014515) | - | 3049377..3050435 (-) | 1059 | WP_125278601.1 | YqaJ viral recombinase family protein | - |
| EGK58_RS14520 (EGK58_014520) | - | 3050613..3051644 (-) | 1032 | WP_219014823.1 | DUF932 domain-containing protein | - |
| EGK58_RS14525 (EGK58_014525) | - | 3051665..3051943 (-) | 279 | WP_125279900.1 | hypothetical protein | - |
| EGK58_RS14530 (EGK58_014530) | - | 3052048..3052917 (-) | 870 | WP_219014814.1 | YagK/YfjJ domain-containing protein | - |
| EGK58_RS14535 (EGK58_014535) | tnpC | 3053172..3054776 (-) | 1605 | WP_219014809.1 | IS66 family transposase | - |
| EGK58_RS14540 (EGK58_014540) | tnpB | 3054851..3055186 (-) | 336 | WP_219014810.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| EGK58_RS14545 (EGK58_014545) | - | 3055183..3055566 (-) | 384 | WP_001055589.1 | transposase | - |
| EGK58_RS14550 (EGK58_014550) | - | 3055895..3058348 (-) | 2454 | WP_219014824.1 | hypothetical protein | - |
| EGK58_RS14555 (EGK58_014555) | - | 3058605..3058851 (-) | 247 | Protein_2829 | tyrosine-type recombinase/integrase | - |
| EGK58_RS14560 (EGK58_014560) | - | 3059240..3059440 (+) | 201 | WP_004781578.1 | hypothetical protein | - |
| EGK58_RS14565 (EGK58_014565) | - | 3059870..3060097 (+) | 228 | WP_004781576.1 | hypothetical protein | - |
| EGK58_RS14575 (EGK58_014575) | - | 3060454..3061293 (-) | 840 | WP_125279603.1 | SAM-dependent methyltransferase | - |
| EGK58_RS14580 (EGK58_014580) | - | 3061297..3062604 (-) | 1308 | WP_125279600.1 | FAD-dependent oxidoreductase | - |
| EGK58_RS14585 (EGK58_014585) | - | 3063019..3063897 (-) | 879 | WP_125279601.1 | pirin family protein | - |
| EGK58_RS14590 (EGK58_014590) | ahpC | 3064144..3064707 (-) | 564 | WP_005232609.1 | alkyl hydroperoxide reductase subunit C | - |
| EGK58_RS14595 (EGK58_014595) | - | 3064859..3065503 (-) | 645 | WP_171431284.1 | TetR/AcrR family transcriptional regulator | - |
| EGK58_RS14600 (EGK58_014600) | - | 3065642..3066095 (+) | 454 | Protein_2837 | hotdog fold domain-containing protein | - |
| EGK58_RS14605 (EGK58_014605) | ssb | 3066165..3066749 (-) | 585 | WP_004781559.1 | single-stranded DNA-binding protein | Machinery gene |
| EGK58_RS14610 (EGK58_014610) | - | 3066801..3068165 (-) | 1365 | WP_004781558.1 | MFS transporter | - |
| EGK58_RS14615 (EGK58_014615) | - | 3068290..3069348 (-) | 1059 | WP_004781556.1 | RNA-guided endonuclease InsQ/TnpB family protein | - |
| EGK58_RS14620 (EGK58_014620) | - | 3069531..3070622 (-) | 1092 | WP_004781554.1 | DUF475 domain-containing protein | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 21179.89 Da Isoelectric Point: 6.4819
>NTDB_id=586431 EGK58_RS14605 WP_004781559.1 3066165..3066749(-) (ssb) [Acinetobacter variabilis strain AV_175]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSGRPQGEQGDNGFNQPRFNNNNQGGGYGNNPQGGYGSAPQQGGFNNNQGGG
YGNNNQNNQGGYAPKSAPAPVAAPAADLDDDLPF
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSGRPQGEQGDNGFNQPRFNNNNQGGGYGNNPQGGYGSAPQQGGFNNNQGGG
YGNNNQNNQGGYAPKSAPAPVAAPAADLDDDLPF
Nucleotide
Download Length: 585 bp
>NTDB_id=586431 EGK58_RS14605 WP_004781559.1 3066165..3066749(-) (ssb) [Acinetobacter variabilis strain AV_175]
ATGCGTGGTGTTAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCTGAGACCAAAACTTTCCCAAATGGTGGTTC
TCTCACTCAATTCTCTATCGCAACCAGCGATTCATGGACTGATAAAAATACGGGCGAACGTAAAGAGCAAACCGAATGGC
ATCGTATTGTGCTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTGCGCAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACCCGTCAATGGACAGATCAAAGCGGTCAAGAACGCTACACAACGGAAATCCGTGGTGAGCAAATGCAAAT
GCTGGATTCTGGTCGTCCACAAGGCGAGCAAGGCGATAACGGTTTTAACCAGCCACGTTTTAATAACAATAACCAGGGTG
GCGGTTATGGCAATAATCCTCAAGGTGGTTATGGCTCAGCTCCTCAGCAAGGTGGTTTTAACAATAATCAGGGCGGTGGT
TATGGCAACAATAACCAAAATAACCAGGGTGGTTATGCGCCGAAGTCTGCACCTGCTCCAGTAGCAGCGCCTGCAGCTGA
TCTGGATGATGATCTTCCATTTTGA
ATGCGTGGTGTTAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCTGAGACCAAAACTTTCCCAAATGGTGGTTC
TCTCACTCAATTCTCTATCGCAACCAGCGATTCATGGACTGATAAAAATACGGGCGAACGTAAAGAGCAAACCGAATGGC
ATCGTATTGTGCTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTGCGCAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACCCGTCAATGGACAGATCAAAGCGGTCAAGAACGCTACACAACGGAAATCCGTGGTGAGCAAATGCAAAT
GCTGGATTCTGGTCGTCCACAAGGCGAGCAAGGCGATAACGGTTTTAACCAGCCACGTTTTAATAACAATAACCAGGGTG
GCGGTTATGGCAATAATCCTCAAGGTGGTTATGGCTCAGCTCCTCAGCAAGGTGGTTTTAACAATAATCAGGGCGGTGGT
TATGGCAACAATAACCAAAATAACCAGGGTGGTTATGCGCCGAAGTCTGCACCTGCTCCAGTAGCAGCGCCTGCAGCTGA
TCTGGATGATGATCTTCCATTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
50 |
100 |
0.521 |
| ssb | Vibrio cholerae strain A1552 |
45 |
100 |
0.464 |
| ssb | Neisseria meningitidis MC58 |
39.796 |
100 |
0.402 |
| ssb | Neisseria gonorrhoeae MS11 |
39.796 |
100 |
0.402 |