Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   TL13_RS08100 Genome accession   NC_021213
Coordinates   1632404..1632898 (-) Length   164 a.a.
NCBI ID   WP_015647334.1    Uniprot ID   A0A0Z8R9G9
Organism   Streptococcus suis TL13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1627404..1637898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS08070 (TL13_1615) - 1628369..1629313 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  TL13_RS08075 (TL13_1616) - 1629329..1629985 (+) 657 WP_015647329.1 DUF1129 domain-containing protein -
  TL13_RS10930 (TL13_1617) - 1630265..1630387 (+) 123 WP_015647330.1 transposase -
  TL13_RS10430 - 1630377..1630871 (-) 495 Protein_1560 helix-turn-helix domain-containing protein -
  TL13_RS08090 (TL13_1620) - 1631299..1631796 (+) 498 WP_015647333.1 hypothetical protein -
  TL13_RS08095 (TL13_1621) rpsR 1632132..1632371 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  TL13_RS08100 (TL13_1622) ssbA 1632404..1632898 (-) 495 WP_015647334.1 single-stranded DNA-binding protein Machinery gene
  TL13_RS08105 (TL13_1623) rpsF 1632910..1633200 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  TL13_RS08110 (TL13_1624) - 1633372..1634361 (-) 990 WP_015647335.1 lipoate--protein ligase -
  TL13_RS08115 (TL13_1625) - 1634558..1635697 (+) 1140 WP_041179458.1 DUF6688 family protein -
  TL13_RS08120 (TL13_1626) lpdA 1635737..1637497 (-) 1761 WP_015647337.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18132.89 Da        Isoelectric Point: 4.7294

>NTDB_id=58641 TL13_RS08100 WP_015647334.1 1632404..1632898(-) (ssbA) [Streptococcus suis TL13]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGTSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=58641 TL13_RS08100 WP_015647334.1 1632404..1632898(-) (ssbA) [Streptococcus suis TL13]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAATGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTATAACTCGCCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAACAAGTAATCCAATGGACATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8R9G9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssb Glaesserella parasuis strain SC1401

32.105

100

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366

Multiple sequence alignment