Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   EGK58_RS01930 Genome accession   NZ_CP078027
Coordinates   437996..438712 (+) Length   238 a.a.
NCBI ID   WP_034702183.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain AV_175     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 432996..443712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGK58_RS01915 (EGK58_001915) ponA 433609..436137 (-) 2529 WP_125278888.1 penicillin-binding protein PBP1a -
  EGK58_RS01920 (EGK58_001920) - 436304..437361 (+) 1058 Protein_370 pilus assembly protein PilM -
  EGK58_RS01925 (EGK58_001925) comN 437361..437999 (+) 639 WP_005233586.1 PilN domain-containing protein Machinery gene
  EGK58_RS01930 (EGK58_001930) pilO 437996..438712 (+) 717 WP_034702183.1 type 4a pilus biogenesis protein PilO Machinery gene
  EGK58_RS01935 (EGK58_001935) pilP 438712..439239 (+) 528 WP_034169727.1 pilus assembly protein PilP Machinery gene
  EGK58_RS01940 (EGK58_001940) pilQ 439301..441422 (+) 2122 Protein_374 type IV pilus secretin PilQ -
  EGK58_RS01945 (EGK58_001945) aroK 441459..441995 (+) 537 WP_005233593.1 shikimate kinase AroK -
  EGK58_RS01950 (EGK58_001950) aroB 442024..443103 (+) 1080 WP_034702179.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26995.60 Da        Isoelectric Point: 4.7609

>NTDB_id=586406 EGK58_RS01930 WP_034702183.1 437996..438712(+) (pilO) [Acinetobacter variabilis strain AV_175]
MSNDGFDELSQDVVAVPRKKMTVEKFFQQFNTLDPNNYGSWPLSVKITCWIFIVILVFMLGYFGFIRGKIEAISQASAQE
QNLLNEFREKESKLRNLQQYQIQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNSGLKFKNIRLEPEIKQEFFIEQP
IAIEATGDYHAFGSFVSSIAGLSRIVTLHDFTITGTENKEKKSEIPVIDYVVKAKTYRYVGNADASSTSATTDTQGAQ

Nucleotide


Download         Length: 717 bp        

>NTDB_id=586406 EGK58_RS01930 WP_034702183.1 437996..438712(+) (pilO) [Acinetobacter variabilis strain AV_175]
ATGAGTAATGACGGATTCGATGAATTAAGCCAAGACGTAGTGGCTGTTCCTAGAAAAAAAATGACAGTTGAGAAATTCTT
TCAACAATTCAATACACTAGATCCAAATAATTATGGTAGCTGGCCATTATCAGTCAAAATTACCTGCTGGATCTTTATTG
TTATTCTGGTTTTTATGCTGGGGTATTTCGGGTTTATTCGCGGCAAGATAGAAGCAATTTCACAAGCCAGTGCTCAAGAA
CAAAACCTGTTAAATGAATTCCGGGAAAAGGAATCCAAGCTGCGTAATTTACAGCAGTATCAGATTCAGTTACAGGAGAT
GGAAGCACGTTTTAATCAGCAATTGGAACAATTGCCGAAAGAAACTGAAATTCCAGGTCTGGTGGAAGATATTAACCTGA
GTGGAGTGAACTCTGGACTGAAATTTAAGAATATTCGTCTTGAACCTGAAATCAAGCAGGAATTCTTTATTGAACAGCCA
ATCGCGATTGAAGCCACTGGGGATTATCATGCCTTTGGTTCTTTTGTGAGCAGTATTGCAGGGCTTTCGCGCATCGTTAC
ACTGCATGATTTCACCATTACAGGAACTGAAAATAAAGAAAAGAAATCTGAAATTCCTGTTATTGATTATGTAGTGAAAG
CGAAAACCTACCGTTATGTAGGCAATGCAGATGCTTCATCTACTTCAGCTACAACTGATACGCAGGGAGCTCAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

69.295

100

0.702
  comO Acinetobacter baylyi ADP1

68.033

100

0.697