Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   EGK58_RS01925 Genome accession   NZ_CP078027
Coordinates   437361..437999 (+) Length   212 a.a.
NCBI ID   WP_005233586.1    Uniprot ID   A0A2L0I1Q6
Organism   Acinetobacter variabilis strain AV_175     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 432361..442999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGK58_RS01910 (EGK58_001910) - 432747..433550 (+) 804 WP_034702194.1 putative RNA methyltransferase -
  EGK58_RS01915 (EGK58_001915) ponA 433609..436137 (-) 2529 WP_125278888.1 penicillin-binding protein PBP1a -
  EGK58_RS01920 (EGK58_001920) - 436304..437361 (+) 1058 Protein_370 pilus assembly protein PilM -
  EGK58_RS01925 (EGK58_001925) comN 437361..437999 (+) 639 WP_005233586.1 PilN domain-containing protein Machinery gene
  EGK58_RS01930 (EGK58_001930) pilO 437996..438712 (+) 717 WP_034702183.1 type 4a pilus biogenesis protein PilO Machinery gene
  EGK58_RS01935 (EGK58_001935) pilP 438712..439239 (+) 528 WP_034169727.1 pilus assembly protein PilP Machinery gene
  EGK58_RS01940 (EGK58_001940) pilQ 439301..441422 (+) 2122 Protein_374 type IV pilus secretin PilQ -
  EGK58_RS01945 (EGK58_001945) aroK 441459..441995 (+) 537 WP_005233593.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23734.91 Da        Isoelectric Point: 4.7909

>NTDB_id=586405 EGK58_RS01925 WP_005233586.1 437361..437999(+) (comN) [Acinetobacter variabilis strain AV_175]
MAKINLLPWRDELRIKRNNEFVAICAGALFLGLAAAGSTWFYYDQKLQDQEQANQLVVSTNQNLDVQLKALDGLQDQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSNMYITKFQRTGDKFTIEGKAESPNTVAELLRNLEASTWYRNAFMNAFLV
AEEPKDKAPSSVIPRVEESYGSFTVTVDLDQIAEPTLKEGQTPATTTAEASS

Nucleotide


Download         Length: 639 bp        

>NTDB_id=586405 EGK58_RS01925 WP_005233586.1 437361..437999(+) (comN) [Acinetobacter variabilis strain AV_175]
ATGGCAAAGATTAACTTACTCCCTTGGCGCGATGAGCTAAGAATTAAAAGAAATAATGAATTTGTAGCGATTTGCGCAGG
GGCACTTTTTCTAGGATTGGCAGCAGCAGGTTCAACCTGGTTCTACTATGATCAAAAACTTCAGGATCAGGAACAGGCCA
ACCAGCTGGTGGTCAGTACTAACCAGAATCTGGATGTACAGCTAAAAGCATTAGATGGTTTACAAGATCAGCGTAATGCA
ATTGTTGAACGTATGAAGCTGATTCAGGGTCTACAGACTCAACGGCCGATTGCAGTTCACCTGATTGATGAAATTGTACG
GGTCACACCAAGCAATATGTACATTACAAAATTTCAGCGTACTGGTGATAAATTCACTATTGAAGGTAAGGCGGAAAGTC
CGAATACAGTAGCTGAATTGCTACGTAATCTGGAAGCTTCTACCTGGTATCGTAATGCATTTATGAATGCTTTCTTAGTC
GCTGAAGAACCAAAAGATAAAGCGCCATCCTCGGTGATCCCACGAGTGGAAGAATCTTATGGCAGCTTTACGGTCACGGT
TGATCTGGATCAAATCGCTGAGCCAACACTTAAAGAAGGACAAACACCAGCCACAACTACAGCGGAGGCATCATCATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0I1Q6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

70.531

97.642

0.689
  pilN Acinetobacter baumannii D1279779

68.293

96.698

0.66